# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	5.74e-06		
2j6aA	141	0.4082		
2ila	155	7.183		
2jwyA	168	10.13		
2jepA	395	24.08		
1uliA	460	29.46	b.33.1.2,d.129.3.3	107921,107922
1v6tA	255	32.59	c.6.2.5	113550
3c0dA	119	33.52		
2gbwA	454	34.13		
1w9yA	319	35.80	b.82.2.1	120801
2h5xA	196	39.63		
2de6A	392	43.38	b.33.1.2,d.129.3.3	131415,131416
1t1jA	125	44.19	c.23.14.2	106249
2retB	175	44.75		
2c3bA	172	46.11	b.62.1.1	129723
2jo6A	113	46.72		
2oggA	152	50.00		
1ypvA	313	50.73		
1sdiA	213	56.09	a.198.1.1	105437
1xw8A	252	58.00	c.6.2.5	116111
3b7nA	320	58.83		
2ox4A	403	63.76		
3ovoA	56	70.62	g.68.1.1	44696
2eb4A	267	74.80		
2b1xA	470	84.24	b.33.1.2,d.129.3.3	127675,127676
2v1yA	108	84.37