# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	2.04e-06		
2j6aA	141	0.6447		
3ovoA	56	4.280	g.68.1.1	44696
1sgpI	51	6.188	g.68.1.1	44678
3sgbI	56	11.75	g.68.1.1	44679
2h5xA	196	11.92		
2ila	155	12.15		
2co5A	99	12.24		
1r0rI	51	19.13	g.68.1.1	96736
1w9yA	319	19.35	b.82.2.1	120801
3b7nA	320	19.92		
2jo6A	113	28.81		
1uliA	460	31.17	b.33.1.2,d.129.3.3	107921,107922
1vm9A	111	33.09	b.33.1.1	108886
1ypvA	313	36.61		
2gbwA	454	38.94		
1aba	87	38.98		
1lv3A	68	48.34	g.39.1.9	78231
2jepA	395	48.71		
3c0dA	119	54.47		
2hwtA	94	54.69		
2co3A	137	60.34	b.2.3.2	130665
1nu0A	138	62.21	c.55.3.8	92165
1yliA	153	66.86	d.38.1.1	123651
2pzmA	330	71.51		
1olmA	403	75.12	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
2ioyA	283	76.26		
1g9zA	152	79.95	d.95.2.1	60408
1sjgA	112	86.04	b.33.1.1	105647
2ch9A	131	86.42