# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.08444		
2j6aA	141	5.067		
2gnpA	266	7.582		
2pd8A	149	7.813		
1gqpA	221	12.60	b.18.1.9	70372
1hn0A	1021	12.90	a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2	83616,83617,83618,83619
2pdrA	149	13.35		
1pvaA	110	13.97	a.39.1.4	17207
2ehzA	302	14.61		
1yreA	197	17.25	d.108.1.1	123919
1s98A	107	19.74	b.124.1.1	105377
1rwyA	109	22.56	a.39.1.4	98002
1rroA	108	26.56	a.39.1.4	17195
2j41A	207	30.61		
2astB	336	33.64	a.158.1.1,c.10.1.3	127273,127274
1fa8A	135	38.08	d.32.1.1	38486
2z0tA	109	38.69		
1z9fA	153	39.10		
1y0nA	78	40.03	d.291.1.1	116305
2ogfA	122	42.01		
1lkdA	297	42.28	d.32.1.3,d.32.1.3	78059,78060
1han	297	43.11		
1zthA	258	49.32		
1qamA	244	52.06	c.66.1.24	34220
1iqzA	81	52.23	d.58.1.4	66281
2dxaA	166	53.15		
1jkeA	145	53.61	c.110.1.1	66791
1g9zA	152	53.96	d.95.2.1	60408
1b8lA	108	54.16	a.39.1.4	17199
1nnxA	109	58.03	b.40.10.1	92013
2asbA	251	58.34	b.40.4.5,d.52.3.1,d.52.3.1	127244,127245,127246
1si2A	149	58.52	b.34.14.1	105569
1qo3C	137	59.65	d.169.1.1	42350
2b67A	204	60.30	d.90.1.1	127970
1repC	251	60.54	a.4.5.10,a.4.5.10	16125,16126
2ab5A	269	60.73		
1rz2A	254	61.69	b.100.1.1	105130
1x19A	359	62.39		
1a75A	108	62.64	a.39.1.4	17216
2i7hA	189	63.83		
1xvjA	109	63.95		
3bsoA	510	64.81		
2fiuA	99	67.86	d.58.4.16	133537
19hcA	292	69.08	a.138.1.1	19668
1f1uA	323	71.48	d.32.1.3,d.32.1.3	83200,83201
2iwkA	642	71.81		
1u69A	163	74.78	d.32.1.7	107699
1bp7A	152	76.51	d.95.2.1	40568
1xqaA	113	76.62	d.32.1.2	115837
1k0rA	366	77.04	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	67961,67962,67963,67964
2ra9A	150	77.92		
1dm9A	133	80.68	d.66.1.3	39560
1g62A	224	81.41	d.126.1.1	41128
2gj3A	120	84.69		
1mpyA	307	85.39	d.32.1.3,d.32.1.3	38508,38509
1c75A	71	87.66	a.3.1.1	15796
1yj7A	171	88.66		
2q1fA	1022	88.75