# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.0995		
2j6aA	141	0.7301		
1ne9A	335	6.252	d.108.1.4,d.108.1.4	91839,91840
2c34A	116	10.13	b.1.26.1	129710
1tjyA	316	13.47	c.93.1.1	107062
2fvyA	309	16.03	c.93.1.1	134227
1k7jA	206	22.54	d.115.1.1	72103
1l4dB	122	31.19	d.15.5.1	77684
2h3hA	313	34.72		
2fn9A	290	37.08		
2qu7A	288	37.35		
2v9dA	343	43.41		
2og5A	357	45.95		
2gfgA	193	50.10		
3c7jA	237	51.37		
2a6sA	84	56.35	d.298.1.1	126305
1rh6A	55	57.78	a.6.1.7	104935
2nteA	210	61.26		
1tgsI	56	63.39	g.68.1.1	44706
2dqrA	122	64.80		
1lkoA	191	65.03	a.25.1.1,g.41.5.1	78063,78064
2zb9A	214	70.66		
1lvaA	258	73.50	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
1gveA	327	76.19	c.1.7.1	70597
2hqbA	296	78.52		
2vhsA	217	82.25		
1u1sA	82	86.49	b.38.1.2	119451