# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.04450		
2j6aA	141	0.2830		
1ne9A	335	7.392	d.108.1.4,d.108.1.4	91839,91840
2c34A	116	13.92	b.1.26.1	129710
2vhsA	217	28.08		
1l4dB	122	30.42	d.15.5.1	77684
1ypvA	313	35.20		
2fvyA	309	36.47	c.93.1.1	134227
1k7jA	206	36.50	d.115.1.1	72103
2v9dA	343	46.23		
2couA	109	47.14		
2a6sA	84	51.94	d.298.1.1	126305
1tjyA	316	58.16	c.93.1.1	107062
1lvaA	258	61.38	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2qu7A	288	64.51		
2co5A	99	64.69		
2og5A	357	74.38		
3c7jA	237	74.95		
2ab5A	269	78.38		
2gfgA	193	79.75		
1suwA	249	82.04	e.52.1.1	106027
2nteA	210	84.61		
1xiwB	79	86.02	b.1.1.4	115368