# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.005421		
2j6aA	141	0.1108		
1ne9A	335	8.155	d.108.1.4,d.108.1.4	91839,91840
1k7jA	206	13.31	d.115.1.1	72103
2c34A	116	18.31	b.1.26.1	129710
1xw8A	252	18.68	c.6.2.5	116111
2fvyA	309	19.00	c.93.1.1	134227
1l4dB	122	19.39	d.15.5.1	77684
2vhsA	217	19.59		
1tjyA	316	20.18	c.93.1.1	107062
2nteA	210	21.64		
1rh6A	55	23.41	a.6.1.7	104935
1u1sA	82	23.86	b.38.1.2	119451
1lvaA	258	23.93	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
3b7nA	320	29.28		
2o3oA	254	29.66		
1rfs	139	32.54		
1lj5A	379	35.78	e.1.1.1	73928
2elnA	38	37.97		
1olmA	403	41.89	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
3c9qA	205	43.37		
2fn9A	290	45.86		
2h3hA	313	48.83		
1v6tA	255	49.14	c.6.2.5	113550
2qu7A	288	49.20		
2uubR	88	49.24	a.4.8.1	139949
2couA	109	55.39		
2v9dA	343	55.56		
2og5A	357	57.16		
2c81A	418	60.08		
2dqrA	122	61.28		
3c7jA	237	61.38		
2de6D	115	61.99		
2i7qA	402	66.19		
1qcsA	211	73.29	b.52.2.3,d.31.1.1	26927,38461
1bywA	110	74.06	d.110.3.6	40912
1wbhA	214	76.07	c.1.10.1	120845
2vqeR	88	76.35		
1gca	309	77.00		
2nr3A	183	78.56		
1oz9A	150	80.16	d.92.1.15	93808
1vlgA	176	81.10	a.25.1.1	108816
2dchX	216	81.36		
1fwxA	595	81.56	b.6.1.4,b.69.3.1	60069,60070
1suwA	249	81.79	e.52.1.1	106027
2hhiA	204	82.63		
1o12A	376	82.75	b.92.1.5,c.1.9.10	80758,80759
2hq4A	161	83.38		
1y1oA	203	83.47	c.52.1.28	116345
2q3wA	111	84.13	b.33.1.1	139813
1wguA	136	87.90	b.55.1.2	114623