# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.01664		
2j6aA	141	0.3374		
1ne9A	335	10.17	d.108.1.4,d.108.1.4	91839,91840
1k7jA	206	13.06	d.115.1.1	72103
1tjyA	316	13.77	c.93.1.1	107062
2c34A	116	13.94	b.1.26.1	129710
2fvyA	309	16.25	c.93.1.1	134227
1l4dB	122	17.63	d.15.5.1	77684
2qu7A	288	21.16		
1lvaA	258	23.29	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2v9dA	343	30.49		
2a6sA	84	32.56	d.298.1.1	126305
2fn9A	290	33.98		
1gca	309	41.13		
2pvfA	334	42.04		
2nteA	210	44.35		
2h3hA	313	48.37		
2hqbA	296	56.93		
2vhsA	217	57.18		
3c7jA	237	59.00		
2og5A	357	60.47		
1rh6A	55	63.86	a.6.1.7	104935
1tgsI	56	67.21	g.68.1.1	44706
2ieeA	271	72.86		
1escA	306	76.64	c.23.10.1	31334
2o3oA	254	78.03		
2dri	271	78.77		
2couA	109	79.54		
1ypvA	313	82.34		
3b7nA	320	84.96		
3ca7A	52	85.01		
1jx6A	342	89.84	c.93.1.1	67406