# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.02103		
2j6aA	141	0.5000		
1ne9A	335	7.545	d.108.1.4,d.108.1.4	91839,91840
2c34A	116	11.68	b.1.26.1	129710
1tjyA	316	13.44	c.93.1.1	107062
2fvyA	309	14.86	c.93.1.1	134227
2qu7A	288	18.19		
1lvaA	258	23.93	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
1k7jA	206	24.26	d.115.1.1	72103
1l4dB	122	24.56	d.15.5.1	77684
2v9dA	343	26.27		
2fn9A	290	34.40		
1gca	309	41.68		
2pvfA	334	42.87		
2h3hA	313	43.10		
2ieeA	271	45.93		
3c7jA	237	54.38		
2a6sA	84	54.86	d.298.1.1	126305
2nteA	210	57.92		
2gfgA	193	58.36		
2vhsA	217	59.20		
2hqbA	296	59.38		
2dri	271	62.45		
1rh6A	55	64.37	a.6.1.7	104935
2og5A	357	69.40		
1escA	306	70.48	c.23.10.1	31334
1tgsI	56	72.29	g.68.1.1	44706
1ypvA	313	80.37		
2o3oA	254	84.66		
2dyqA	144	87.28