# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.04047		
2j6aA	141	0.7004		
1ne9A	335	10.16	d.108.1.4,d.108.1.4	91839,91840
2c34A	116	11.81	b.1.26.1	129710
1tjyA	316	17.99	c.93.1.1	107062
1k7jA	206	23.08	d.115.1.1	72103
2fvyA	309	25.57	c.93.1.1	134227
2qu7A	288	25.61		
1l4dB	122	28.15	d.15.5.1	77684
1lvaA	258	29.14	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2pvfA	334	30.58		
2v9dA	343	35.71		
2fn9A	290	43.13		
2hqbA	296	50.11		
2nteA	210	51.07		
2vhsA	217	53.32		
2gfgA	193	53.68		
2ieeA	271	54.82		
2h3hA	313	59.32		
2a6sA	84	60.63	d.298.1.1	126305
3c7jA	237	64.63		
2co5A	99	66.13		
1tgsI	56	71.24	g.68.1.1	44706
1ypvA	313	74.18		
1escA	306	77.48	c.23.10.1	31334
2ab5A	269	78.96		
1rh6A	55	80.78	a.6.1.7	104935
2og5A	357	81.77		
2i79A	172	86.51		
2dri	271	89.69