# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.01278		
2j6aA	141	1.218		
2v9dA	343	8.693		
1lvaA	258	17.11	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2ab5A	269	18.70		
1h7eA	245	30.90	c.68.1.13	60717
1oo0A	147	31.66	d.232.1.1	87182
2dg7A	195	34.74		
1kv9A	668	39.96	a.3.1.6,b.70.1.1	73056,73057
2r2oA	138	48.36		
3b7nA	320	55.63		
1cuk	203	56.12		
1lkoA	191	56.33	a.25.1.1,g.41.5.1	78063,78064
1cukA	203	56.77	a.5.1.1,a.60.2.1,b.40.4.2	16273,17946,25265
1ne9A	335	58.80	d.108.1.4,d.108.1.4	91839,91840
1rh6A	55	61.08	a.6.1.7	104935
2d1lA	253	66.92		
2og5A	357	67.56		
1gveA	327	67.87	c.1.7.1	70597
1k7jA	206	69.92	d.115.1.1	72103
2h5xA	196	74.39		
2pkhA	148	76.69		
2a6sA	84	82.28	d.298.1.1	126305
1vzsA	76	83.39	f.45.1.1	108972
2p19A	149	87.17		
2yruA	118	87.19		
1p99A	295	88.30	c.94.1.1	94384