# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.002657		
2j6aA	141	0.1262		
1ne9A	335	0.9342	d.108.1.4,d.108.1.4	91839,91840
2dpmA	284	1.593	c.66.1.28	34246
2f57A	317	2.285		
2vhsA	217	3.163		
2o0uA	364	4.771	d.144.1.7	138868
1u8fO	335	5.311	c.2.1.3,d.81.1.1	119626,119627
2e7uA	424	5.831		
2basA	431	5.974	c.1.33.1,d.110.6.2	128244,128245
2dnjA	260	6.411	d.151.1.1	41790
2akaB	299	6.913	c.37.1.8	126914
2fn9A	290	6.951		
1ynpA	317	7.064		
1ohvA	472	7.072	c.67.1.4	93031
1gadO	330	8.997	c.2.1.3,d.81.1.1	29950,39865
3ctpA	330	10.64		
1l4dB	122	11.51	d.15.5.1	77684
1si6X	282	12.41	d.151.1.2	118968
2hqyA	305	13.40		
2qf3A	243	13.73		
1zsxA	347	14.76		
2ab5A	269	14.94		
1j7xA	302	15.03	c.14.1.2	66425
1oq1A	223	15.15	b.29.1.17	93408
1k7jA	206	15.62	d.115.1.1	72103
2pcqA	283	15.67		
2epjA	434	16.84		
1bd8A	156	16.88	d.211.1.1	19157
2cy8A	453	17.22		
2i2cA	272	17.83		
1j31A	262	18.05	d.160.1.2	90808
1phkA	298	19.24	d.144.1.7	41635
1bd8	156	20.04		
2qu7A	288	20.47		
3b2tA	311	20.78		
2dqrA	122	21.75		
2nteA	210	22.64		
2ftwA	521	23.72	b.92.1.3,c.1.9.6	134083,134084
2a6sA	84	23.80	d.298.1.1	126305
2vgeA	229	26.60		
1v5vA	401	26.75	b.44.2.1,d.250.1.1	113539,113540
2e5vA	472	26.86		
1mucA	373	27.93	c.1.11.2,d.54.1.1	29236,38880
1lqaA	346	29.43	c.1.7.1	84674
1w2tA	432	29.59	b.29.1.19,b.67.2.3	120607,120608
3bu3A	306	29.83		
1ypvA	313	30.30		
1n9eA	787	30.33	b.30.2.1,d.17.2.1,d.17.2.1	91708,91709,91710
2jbmA	299	30.64		
2c34A	116	30.99	b.1.26.1	129710
2bzlA	325	31.15		
1olmA	403	34.24	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
2bw0A	329	34.39	b.46.1.1,c.65.1.1	129303,129304
2v9dA	343	34.70		
2in1A	175	35.18	d.20.1.4	137521
2coiA	386	37.13		
1ec7A	446	37.14	c.1.11.2,d.54.1.1	29218,38862
2p67A	341	37.33		
1jx6A	342	37.90	c.93.1.1	67406
2fctA	313	38.48	b.82.2.9	133282
1n9lA	109	39.04	d.110.3.6	85468
7aatA	401	39.47	c.67.1.1	34250
2jabA	136	39.55		
2ieeA	271	39.86		
2z6wA	165	40.68		
1tgsI	56	41.22	g.68.1.1	44706
2nq5A	755	41.39		
1nl1A	147	41.47	g.14.1.1,g.32.1.1	91949,91950
1kutA	230	41.76	d.143.1.1	73017
1buoA	121	45.97	d.42.1.1	38631
1oz9A	150	46.14	d.92.1.15	93808
1jihA	531	49.01	d.240.1.1,e.8.1.7	90374,90375
1in4A	334	52.38	a.4.5.11,c.37.1.20	62597,62598
3d02A	303	52.48		
1pyfA	312	54.40	c.1.7.1	95334
2gnqA	336	54.41		
2o0yA	260	55.89		
3c7jA	237	55.90		
1rypB	250	58.91	d.153.1.4	41933
2j89A	261	59.37		
1mtzA	293	60.44	c.69.1.7	79467
2j8mA	172	61.17		
1xafA	246	61.22	d.194.1.2	109535
1c8uA	285	63.59	d.38.1.3,d.38.1.3	38547,38548
1yi8A	351	64.22		
2boyA	254	64.38		
1aua	296	64.67		
1bywA	110	66.37	d.110.3.6	40912
2hkjA	469	66.75	a.156.1.3,d.14.1.3,d.122.1.2	136553,136554,136555
1xfiA	367	66.97	e.50.1.1	109584
3bg2A	444	67.41		
1vqqA	646	68.16	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
3c4zA	543	68.43		
2gicA	422	68.70	a.260.1.1	135227
1t4bA	367	68.98	c.2.1.3,d.81.1.1	106406,106407
2dchX	216	69.94		
2rfmA	192	71.00		
2rhmA	193	71.56		
1y63A	184	72.74	c.37.1.1	116494
2zb9A	214	74.68		
1mpyA	307	76.05	d.32.1.3,d.32.1.3	38508,38509
1rh6A	55	76.35	a.6.1.7	104935
2gfiA	458	77.17		
2etxA	209	78.50		
2cy2A	174	79.82	d.108.1.1	131016
3bq5A	766	80.69		
2rh1A	500	81.50		
2uwxA	494	82.08	e.3.1.1	140002
2h3hA	313	82.65		
1pz1A	333	83.22	c.1.7.1	95390
2opcA	127	83.23		
2r1fA	270	83.96		
2nooA	502	84.70		
2euaA	431	85.12	d.161.1.1	132380
1hbnC	248	85.91	d.58.31.1	60902
1ockA	412	87.07	c.117.1.1	86802
2py5A	575	87.08		
2vafA	378	87.37		
2gqwA	408	87.61		
2iufA	688	88.33