# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.03526		
2j6aA	141	0.3817		
1ne9A	335	6.621	d.108.1.4,d.108.1.4	91839,91840
1k7jA	206	9.615	d.115.1.1	72103
2c34A	116	11.87	b.1.26.1	129710
1tjyA	316	17.81	c.93.1.1	107062
2fvyA	309	19.83	c.93.1.1	134227
2og5A	357	25.24		
2nteA	210	34.67		
3b7nA	320	42.77		
1tgsI	56	43.85	g.68.1.1	44706
2v9dA	343	44.01		
2d1lA	253	48.96		
2qu7A	288	51.69		
2fn9A	290	52.07		
2co5A	99	54.63		
175lA	164	63.38	d.2.1.3	36924
1l4dB	122	64.50	d.15.5.1	77684
3ca7A	52	65.48		
2vhsA	217	66.22		
1lvaA	258	67.55	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
174lA	164	68.77	d.2.1.3	36956
2gfgA	193	73.36		
137lA	164	79.12	d.2.1.3	36791
3c7jA	237	83.45		
1olmA	403	84.05	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
2h3hA	313	84.46		
1rh6A	55	85.99	a.6.1.7	104935
2dqrA	122	89.06		
1smd	496	89.45