# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.05885		
2j6aA	141	0.6477		
1ne9A	335	9.682	d.108.1.4,d.108.1.4	91839,91840
1k7jA	206	12.45	d.115.1.1	72103
2c34A	116	14.02	b.1.26.1	129710
1l4dB	122	15.11	d.15.5.1	77684
2fvyA	309	24.16	c.93.1.1	134227
1tjyA	316	27.36	c.93.1.1	107062
2og5A	357	32.46		
2qu7A	288	32.60		
2a6sA	84	49.57	d.298.1.1	126305
2nteA	210	63.04		
3ca7A	52	65.41		
1tgsI	56	67.40	g.68.1.1	44706
2v9dA	343	69.17		
2o3oA	254	72.35		
2fn9A	290	72.51		
2gfgA	193	74.22		
2ieeA	271	75.05		
1lvaA	258	76.50	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
3c7jA	237	77.66		
1suwA	249	78.39	e.52.1.1	106027
2gp6A	434	86.07		
1rh6A	55	87.66	a.6.1.7	104935
2couA	109	89.02