# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.01172		
2j6aA	141	0.7483		
2v9dA	343	11.82		
1k7jA	206	16.77	d.115.1.1	72103
2ab5A	269	22.65		
2hhiA	204	35.58		
1lkoA	191	36.24	a.25.1.1,g.41.5.1	78063,78064
2og5A	357	36.47		
2d1lA	253	38.01		
1kv9A	668	47.11	a.3.1.6,b.70.1.1	73056,73057
2r7hA	177	49.92		
2oc6A	124	50.40		
1olmA	403	51.67	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
2jw5A	106	51.84		
1rh6A	55	58.62	a.6.1.7	104935
2r2oA	138	62.64		
1qcsA	211	63.55	b.52.2.3,d.31.1.1	26927,38461
1tyvA	554	63.74	b.80.1.6	28038
1xw8A	252	64.94	c.6.2.5	116111
137lA	164	65.53	d.2.1.3	36791
1iznA	286	65.76	e.43.1.1	83847
1dcs	311	68.31		
2a6sA	84	68.65	d.298.1.1	126305
2cyaA	364	72.57		
1h7eA	245	73.85	c.68.1.13	60717
3b7nA	320	76.26		
175lA	164	78.47	d.2.1.3	36924
1yi8A	351	79.22		
1v6tA	255	82.06	c.6.2.5	113550
1i6lA	328	87.89	c.26.1.1	66041