# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.009040		
2j6aA	141	1.296		
3b7nA	320	4.319		
2co5A	99	12.78		
1olmA	403	17.56	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
2og5A	357	18.75		
1lvaA	258	22.99	a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35	74276,74277,74278,74279
2nteA	210	23.81		
1rh6A	55	25.31	a.6.1.7	104935
2v9dA	343	26.14		
3ca7A	52	28.22		
2ab5A	269	28.60		
1dcs	311	32.16		
175lA	164	34.56	d.2.1.3	36924
137lA	164	39.85	d.2.1.3	36791
2fvyA	309	40.66	c.93.1.1	134227
2h5xA	196	41.03		
2ozgA	396	43.53		
2p19A	149	45.68		
174lA	164	49.02	d.2.1.3	36956
1cuk	203	50.83		
167lA	164	51.90	d.2.1.3	36937
1tgsI	56	52.07	g.68.1.1	44706
2cyaA	364	52.28		
176lA	164	52.63	d.2.1.3	36942
1dcsA	311	54.41	b.82.2.1	28124
3grsA	478	54.57	c.3.1.5,c.3.1.5,d.87.1.1	30441,30442,40152
2a6sA	84	55.28	d.298.1.1	126305
1cukA	203	59.00	a.5.1.1,a.60.2.1,b.40.4.2	16273,17946,25265
2d1lA	253	60.53		
168lA	164	66.09	d.2.1.3	36975
2couA	109	68.48		
1kv9A	668	68.95	a.3.1.6,b.70.1.1	73056,73057
2elnA	38	73.54		
2qu7A	288	74.52		
2dri	271	74.61		
2fn9A	290	74.97		
2o3oA	254	75.18		
1tjyA	316	75.25	c.93.1.1	107062
1xrsA	516	78.05	c.1.19.4	115883
8abpA	306	82.54	c.93.1.1	35647
2r2oA	138	83.79		
2fa1A	160	84.26	d.190.1.2	133182
1h8mA	140	85.33	d.110.4.1	60782
1escA	306	85.77	c.23.10.1	31334
1xw8A	252	86.27	c.6.2.5	116111
2fqxA	318	86.74		
1ne9A	335	88.18	d.108.1.4,d.108.1.4	91839,91840
1i6lA	328	89.43	c.26.1.1	66041
2ieeA	271	89.72