# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.004825		
2j6aA	141	0.3628		
1k7jA	206	4.355	d.115.1.1	72103
2couA	109	7.281		
1ypvA	313	13.82		
1ne9A	335	18.85	d.108.1.4,d.108.1.4	91839,91840
1suwA	249	19.02	e.52.1.1	106027
2co5A	99	21.14		
1cl1A	395	22.36	c.67.1.3	34395
1olmA	403	33.02	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
2v9dA	343	38.60		
2h0aA	276	39.47		
3cebA	194	39.83		
1z0sA	278	52.10	e.52.1.1	124328
2a6sA	84	56.16	d.298.1.1	126305
2nteA	210	57.26		
1gudA	288	58.68	c.93.1.1	83326
1hk9A	74	59.52	b.38.1.2	83541
2d3yA	219	63.45		
2c34A	116	66.69	b.1.26.1	129710
2jj7A	186	72.62		
1l4dB	122	74.26	d.15.5.1	77684
2hhiA	204	85.52		
2elnA	38	85.85