# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.000264		
2j6aA	141	0.05447		
1k7jA	206	1.012	d.115.1.1	72103
1rfs	139	5.602		
1olmA	403	6.668	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
2hhiA	204	8.338		
1xw8A	252	9.784	c.6.2.5	116111
1suwA	249	12.29	e.52.1.1	106027
1rfsA	139	15.37	b.33.1.1	24434
1aua	296	18.99		
1ugpB	226	19.10	b.34.4.4	107832
1ireB	228	19.17	b.34.4.4	76770
2nteA	210	22.62		
2de6D	115	24.09		
2couA	109	24.96		
1rh6A	55	28.16	a.6.1.7	104935
2h0aA	276	28.69		
1bywA	110	29.35	d.110.3.6	40912
2jj7A	186	31.00		
1u2hA	99	33.44		
1c4kA	730	34.78	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
1cl1A	395	35.10	c.67.1.3	34395
1u1sA	82	36.30	b.38.1.2	119451
1hk9A	74	36.41	b.38.1.2	83541
1v6tA	255	38.10	c.6.2.5	113550
2h7jA	220	38.52	d.3.1.1	136216
2dqrA	122	40.34		
1lj5A	379	46.07	e.1.1.1	73928
1ne9A	335	51.20	d.108.1.4,d.108.1.4	91839,91840
2egjA	128	51.38		
2v9dA	343	51.49		
1gl4A	285	52.45	d.22.1.2,g.3.11.5	65286,65287
1z0sA	278	53.25	e.52.1.1	124328
2oaaA	249	53.69		
1z54A	132	53.75	d.38.1.1	124450
2qtdA	105	57.14		
2elnA	38	59.01		
2frqA	225	59.83	d.3.1.1	133999
1vlwA	217	61.65	c.1.10.1	108868
2uubR	88	65.26	a.4.8.1	139949
1okrA	123	66.41	a.4.5.39	93269
1y1oA	203	66.67	c.52.1.28	116345
2dyqA	144	70.86		
1auaA	296	72.96	a.5.3.1,c.13.1.1	16290,30882
2vkpA	109	73.64		
2djfB	164	74.87		
1ypvA	313	75.57		
2hq4A	161	76.12		
2fcoA	200	76.61		
1fqtA	112	78.50	b.33.1.1	24441
3cswA	285	83.37		
1yxmA	303	87.95	c.2.1.2	124192
2d3yA	219	89.63		
2yw3A	207	89.89