# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.002563		
2j6aA	141	0.3061		
1k7jA	206	3.501	d.115.1.1	72103
2v9dA	343	19.48		
1suwA	249	21.00	e.52.1.1	106027
1olmA	403	21.27	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
1ne9A	335	23.24	d.108.1.4,d.108.1.4	91839,91840
2couA	109	24.39		
2h0aA	276	29.17		
1pyfA	312	38.55	c.1.7.1	95334
2dqrA	122	38.81		
1okrA	123	39.43	a.4.5.39	93269
1ypvA	313	40.86		
1l4dB	122	42.77	d.15.5.1	77684
2a6sA	84	43.10	d.298.1.1	126305
2c34A	116	49.16	b.1.26.1	129710
2dyqA	144	49.99		
2jj7A	186	54.96		
1jx6A	342	55.42	c.93.1.1	67406
2nteA	210	56.42		
1rh6A	55	56.45	a.6.1.7	104935
1cl1A	395	57.55	c.67.1.3	34395
3ca7A	52	69.36		
1ur3M	319	69.64	c.1.7.1	99806
1gca	309	70.39		
3cebA	194	71.73		
1z0sA	278	76.95	e.52.1.1	124328
1ucrA	78	77.45	a.4.5.45	99188
1cukA	203	79.29	a.5.1.1,a.60.2.1,b.40.4.2	16273,17946,25265
2qwtA	196	79.79		
1u1sA	82	79.95	b.38.1.2	119451
2ywlA	180	83.72		
1xovA	326	85.95	b.34.11.4,c.56.5.6	122206,122207
2bp1A	360	86.05		
1hk9A	74	87.23	b.38.1.2	83541
1sd4A	126	88.42	a.4.5.39	105428