# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.002532		
2j6aA	141	0.5515		
1k7jA	206	7.330	d.115.1.1	72103
2couA	109	20.32		
2v9dA	343	20.41		
1ne9A	335	23.57	d.108.1.4,d.108.1.4	91839,91840
1olmA	403	23.75	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
1suwA	249	28.51	e.52.1.1	106027
2h0aA	276	32.51		
1pyfA	312	32.78	c.1.7.1	95334
2c34A	116	37.26	b.1.26.1	129710
2dyqA	144	42.72		
2nteA	210	43.89		
2jj7A	186	45.02		
1ypvA	313	45.26		
2co5A	99	47.73		
2a6sA	84	48.68	d.298.1.1	126305
1ur3M	319	51.13	c.1.7.1	99806
1jx6A	342	53.95	c.93.1.1	67406
3ca7A	52	54.47		
1okrA	123	54.94	a.4.5.39	93269
1cl1A	395	55.79	c.67.1.3	34395
1rh6A	55	68.29	a.6.1.7	104935
2bp1A	360	71.35		
2hhiA	204	74.10		
1cukA	203	76.52	a.5.1.1,a.60.2.1,b.40.4.2	16273,17946,25265
1gca	309	77.56		
1hw6A	278	78.71	c.1.7.1	61296
1bd8A	156	79.14	d.211.1.1	19157
2ywlA	180	80.27		
2qwtA	196	82.39		
1xoyA	161	85.75	b.18.1.26	115718
3cebA	194	88.55		
1l4dB	122	89.89	d.15.5.1	77684