# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.001891		
2j6aA	141	0.5059		
1k7jA	206	4.100	d.115.1.1	72103
2h0aA	276	16.37		
2v9dA	343	19.96		
1ne9A	335	20.22	d.108.1.4,d.108.1.4	91839,91840
1suwA	249	20.81	e.52.1.1	106027
2couA	109	27.24		
2nteA	210	33.43		
1jx6A	342	37.02	c.93.1.1	67406
2c34A	116	37.31	b.1.26.1	129710
1olmA	403	37.51	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
2dyqA	144	38.81		
1okrA	123	42.62	a.4.5.39	93269
1ypvA	313	43.02		
2jj7A	186	44.07		
1pyfA	312	46.26	c.1.7.1	95334
1rh6A	55	49.61	a.6.1.7	104935
1gudA	288	54.25	c.93.1.1	83326
1hk9A	74	54.71	b.38.1.2	83541
1cl1A	395	58.56	c.67.1.3	34395
3ca7A	52	60.55		
1u1sA	82	62.35	b.38.1.2	119451
2a6sA	84	64.05	d.298.1.1	126305
1gca	309	64.39		
1ur3M	319	67.96	c.1.7.1	99806
2dqrA	122	68.96		
1z0sA	278	73.36	e.52.1.1	124328
2ywlA	180	76.16		
2co5A	99	78.87		
1l4dB	122	81.34	d.15.5.1	77684
1bd8A	156	83.74	d.211.1.1	19157
2occJ	59	84.43	f.23.4.1	43524
1xovA	326	88.62	b.34.11.4,c.56.5.6	122206,122207
3cebA	194	88.98		
1ucrA	78	89.02	a.4.5.45	99188