# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.004551		
2j6aA	141	0.5046		
1k7jA	206	2.713	d.115.1.1	72103
1olmA	403	23.52	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
3colA	196	25.43		
2jj7A	186	25.84		
2v9dA	343	28.68		
1pyfA	312	41.89	c.1.7.1	95334
1rh6A	55	46.71	a.6.1.7	104935
2a6sA	84	47.07	d.298.1.1	126305
1hk9A	74	48.81	b.38.1.2	83541
1ypvA	313	50.84		
2couA	109	52.44		
1ne9A	335	52.79	d.108.1.4,d.108.1.4	91839,91840
2h0aA	276	54.30		
1suwA	249	60.07	e.52.1.1	106027
1l4dB	122	63.73	d.15.5.1	77684
1u1sA	82	67.19	b.38.1.2	119451
2co5A	99	67.47		
1zsxA	347	72.89		
1exbA	332	73.12	c.1.7.1	28666
1cl1A	395	73.84	c.67.1.3	34395
1zvnA	99	75.54		
2h7jA	220	75.59	d.3.1.1	136216
1bd8A	156	75.82	d.211.1.1	19157
3cebA	194	76.29		
2c34A	116	78.68	b.1.26.1	129710
2nteA	210	82.00		
1ucrA	78	84.18	a.4.5.45	99188
1okrA	123	89.95	a.4.5.39	93269