# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.004895		
2j6aA	141	0.9065		
1k7jA	206	5.112	d.115.1.1	72103
2jj7A	186	16.25		
1ne9A	335	25.66	d.108.1.4,d.108.1.4	91839,91840
2v9dA	343	26.35		
3colA	196	30.26		
1rh6A	55	32.43	a.6.1.7	104935
1olmA	403	34.20	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
1suwA	249	37.51	e.52.1.1	106027
1ypvA	313	43.61		
1pyfA	312	45.38	c.1.7.1	95334
2co5A	99	47.01		
2h0aA	276	50.50		
1cl1A	395	52.83	c.67.1.3	34395
1hk9A	74	54.72	b.38.1.2	83541
1xoyA	161	58.19	b.18.1.26	115718
2c34A	116	60.79	b.1.26.1	129710
2couA	109	62.29		
3ca7A	52	64.05		
2a6sA	84	64.56	d.298.1.1	126305
2hhiA	204	66.97		
1bd8A	156	68.75	d.211.1.1	19157
1l4dB	122	72.13	d.15.5.1	77684
1u1sA	82	73.88	b.38.1.2	119451
1zk8A	183	78.00	a.4.1.9,a.121.1.1	125177,125178
2ywlA	180	78.16		
2vkpA	109	80.82		
1ucrA	78	80.97	a.4.5.45	99188