# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.004743		
2j6aA	141	0.3364		
1k7jA	206	2.130	d.115.1.1	72103
1olmA	403	11.78	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
1ne9A	335	19.35	d.108.1.4,d.108.1.4	91839,91840
2h0aA	276	24.39		
1cl1A	395	26.29	c.67.1.3	34395
2hhiA	204	29.06		
2couA	109	29.20		
2v9dA	343	30.61		
2c34A	116	38.50	b.1.26.1	129710
1suwA	249	45.24	e.52.1.1	106027
2nteA	210	46.89		
1hk9A	74	47.02	b.38.1.2	83541
1aua	296	50.55		
1u1sA	82	58.57	b.38.1.2	119451
1rh6A	55	59.21	a.6.1.7	104935
1ypvA	313	62.28		
1pyfA	312	67.15	c.1.7.1	95334
2co5A	99	67.39		
1bd8A	156	69.02	d.211.1.1	19157
3ca7A	52	79.14		
1c4kA	730	79.70	c.23.1.4,c.67.1.5,d.125.1.1	31273,34502,41123
1zsxA	347	82.28		
1gveA	327	84.02	c.1.7.1	70597
1ireB	228	86.81	b.34.4.4	76770
1lj5A	379	87.86	e.1.1.1	73928
1ugpB	226	88.10	b.34.4.4	107832
2vqeR	88	88.12		
2yw3A	207	88.84