# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.01209		
2j6aA	141	3.571		
1k7jA	206	11.21	d.115.1.1	72103
1xh9A	350	15.76		
2v9dA	343	16.49		
1olmA	403	21.66	a.5.3.1,b.132.1.1,c.13.1.1	104008,104009,104010
1xw8A	252	24.05	c.6.2.5	116111
2couA	109	26.76		
1giqA	413	29.26	d.166.1.1,d.166.1.1	76224,76225
2jw5A	106	37.92		
1zx2A	147	44.45		
2hhiA	204	44.47		
1xoyA	161	51.11	b.18.1.26	115718
1rh6A	55	52.65	a.6.1.7	104935
2dg7A	195	55.57		
1d2rA	326	58.73	c.26.1.1	31572
2h0aA	276	59.11		
2jj7A	186	63.11		
1zk8A	183	68.88	a.4.1.9,a.121.1.1	125177,125178
1llaA	628	71.60	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
2a6lA	292	71.69	c.1.10.1	126285
2nzhA	113	72.34		
2a6nA	292	73.85	c.1.10.1	126289
2zodA	345	85.68		
1zvnA	99	85.85		
1m8jA	181	86.34	c.26.1.3	84875