# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2hf1A	68	0.2023		
2gj3A	120	0.9490		
2pdrA	149	2.280		
2j6aA	141	5.404		
1bywA	110	7.326	d.110.3.6	40912
1gqpA	221	8.591	b.18.1.9	70372
1s98A	107	8.982	b.124.1.1	105377
2pd8A	149	9.114		
2couA	109	15.54		
1yreA	197	26.02	d.108.1.1	123919
2cx1A	187	26.43	b.122.1.1,d.17.6.4	130967,130968
2iwkA	642	27.31		
1n9lA	109	29.48	d.110.3.6	85468
1repC	251	30.36	a.4.5.10,a.4.5.10	16125,16126
1uliB	187	30.74	d.17.4.4	107923
1jnuA	104	33.62	d.110.3.6	71762
2msbA	115	34.18	d.169.1.1	42355
2v0uA	146	39.68		
1wuaA	375	39.89	c.55.1.1,c.55.1.1	121281,121282
1u69A	163	40.58	d.32.1.7	107699
1r4kA	169	40.83	b.34.14.1	96997
1llaA	628	41.82	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
2culA	232	45.08	c.3.1.7	130813
1ypvA	313	45.27		
1xeeA	91	47.54		
1fwxA	595	48.24	b.6.1.4,b.69.3.1	60069,60070
1g9zA	152	50.50	d.95.2.1	60408
1r94A	118	51.19	b.124.1.1	97251
1zs7A	190	51.84	b.122.1.1,d.17.6.4	125593,125594
1iqzA	81	52.35	d.58.1.4	66281
1iazA	179	53.28	b.97.1.1	62131
2j6vA	301	54.73		
1t9iA	163	54.78	d.95.2.1	112360
1u7iA	136	56.93	d.32.1.7	107724
2axtC	473	59.53		
1vj1A	363	59.73	b.35.1.2,c.2.1.1	100794,100795
1y0nA	78	61.24	d.291.1.1	116305
2g5xA	234	61.58		
2ex5A	207	61.95		
1y0uA	96	62.76	a.4.5.5	116310
1rzhH	260	63.32	b.41.1.1,f.23.10.1	98162,98163
1h3fA	432	63.41	c.26.1.1,d.66.1.4	76631,76632
1si2A	149	63.43	b.34.14.1	105569
1rdo1	113	63.77		
1lddA	74	67.20	a.4.5.34	73841
2jv2A	83	67.27		
1u1sA	82	67.65	b.38.1.2	119451
1mpyA	307	72.03	d.32.1.3,d.32.1.3	38508,38509
3bdwB	120	75.04		
1hk9A	74	76.64	b.38.1.2	83541
2ch0A	133	77.51		
1oscA	126	77.57	d.58.5.2	93490
1qniA	581	78.95	b.6.1.4,b.69.3.1	23042,27642
2ogfA	122	80.85		
1lkdA	297	81.50	d.32.1.3,d.32.1.3	78059,78060
1gwyA	175	84.17	b.97.1.1	83356
2rbbA	141	85.53		
2vqeM	126	85.75		
2bwkA	121	85.83		
1rgzA	363	89.13	e.3.1.1	97457
1r1mA	164	89.84	d.79.7.1	96820
2b1xB	172	89.87	d.17.4.4	127677