# List of top-scoring protein chains for T0462.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	4.55e-06		
2gcxA	75	1.67e-05		
1fx7A	230	0.3070	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2ohfA	396	4.594		
2dbyA	368	14.32		
2dchX	216	16.49		
2z83A	459	17.35		
2qeqA	434	20.65		
2inbA	140	22.72		
1egaA	301	31.51	c.37.1.8,d.52.3.1	32150,38836
2hjgA	436	32.01		
2uzpA	144	38.29		
2okfA	140	38.59		
1x18X	292	44.12	c.37.1.8,d.52.3.1	121577,121578
1j6oA	268	44.41	c.1.9.12	77088
2e87A	357	47.58		
1qvpA	87	47.92	b.34.1.2	111659
1bymA	97	49.84	b.34.1.2	24458
1e5pA	151	51.51	b.60.1.1	59272
1qw1A	121	59.80		
1sviA	195	61.85	c.37.1.8	106048
1g3tA	226	62.44	a.4.5.24,a.76.1.1,b.34.1.2	65127,65128,65129
2qq9A	226	62.78		
2qqaA	226	63.06		
2qqbA	226	63.13		
2tdxA	226	63.27	a.4.5.24,a.76.1.1	16201,18407
2ekkA	47	67.50		
1fwzA	226	68.25	a.4.5.24,a.76.1.1,b.34.1.2	60077,60078,60079
1c0wA	225	68.78	a.4.5.24,a.76.1.1,b.34.1.2	16211,18417,24455
2dtrA	226	68.86	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1p92A	226	69.01	a.4.5.24,a.76.1.1,b.34.1.2	104085,104086,104087
1g3yA	226	69.87	a.4.5.24,a.76.1.1,b.34.1.2	65136,65137,65138
2zkrp	196	70.43		
1dxeA	256	70.84	c.1.12.5	29310
1y8xB	98	77.42		
1z3kA	98	77.68		
2vbcA	618	78.21		
2ciaA	102	81.77		
2p91A	285	82.90		
2nq2C	253	87.66