# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.64e-12 2gcxA 75 2.07e-11 1fx7A 230 9.45e-06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 0.000114 2dtr 226 0.000127 2qq9A 226 0.000163 2dtrA 226 0.000620 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.001750 2qu8A 228 0.1944 1lnzA 342 0.3383 b.117.1.1,c.37.1.8 78112,78113 1bymA 97 0.6348 b.34.1.2 24458 1udxA 416 0.6703 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2e87A 357 0.7033 2cxxA 190 0.7572 c.37.1.8 131013 1pujA 282 0.8317 c.37.1.8 88294 2dbyA 368 1.474 1fzqA 181 2.184 c.37.1.8 32060 1tq4A 413 2.295 c.37.1.8 107201 2gj8A 172 2.556 c.37.1.8 135270 2hjgA 436 3.139 1sviA 195 3.174 c.37.1.8 106048 1wf3A 301 3.419 c.37.1.8,d.52.3.1 114574,114575 1puiA 210 3.482 c.37.1.8 88292 1va0A 239 4.345 c.90.1.1 119899 1egaA 301 5.189 c.37.1.8,d.52.3.1 32150,38836 1pjzA 203 5.350 c.66.1.36 94794 2qwvA 208 9.309 1oixA 191 9.892 c.37.1.8 118710 1h65A 270 10.61 c.37.1.8 65640 1zd9A 188 12.18 c.37.1.8 124938 1z06A 189 12.65 c.37.1.8 124301 3bfkA 181 12.78 2dpxA 174 14.13 2gjsA 176 14.30 c.37.1.8 135287 1u8zA 168 15.13 c.37.1.8 113212 2qi9C 249 16.26 1xtqA 177 16.36 c.37.1.8 122297 2dykA 161 17.84 2pzeA 229 17.85 1nrjB 218 18.26 c.37.1.8 86125 1ukvY 206 19.70 c.37.1.8 107918 1tq6A 413 20.42 c.37.1.8 107202 2bmeA 186 21.58 c.37.1.8 128790 1x3sA 195 22.90 c.37.1.8 121670 2h17A 181 22.95 1ji0A 240 23.45 c.37.1.12 71665 2ew1A 201 23.91 c.37.1.8 132446 1oivA 191 23.92 c.37.1.8 93076 2p5sA 199 24.11 1m2oB 190 24.80 c.37.1.8 78485 1l2tA 235 25.00 c.37.1.12 73514 2nn8A 138 27.25 b.29.1.3 138392 1yzgA 179 27.74 c.37.1.8 124276 2cbzA 237 28.23 2ce2X 166 28.36 2bbsA 290 29.54 1b0uA 262 29.94 c.37.1.12 32370 2bwjA 199 30.86 1yzqA 170 31.22 c.37.1.8 124286 1wmsA 177 32.46 c.37.1.8 109414 2pcjA 224 32.53 1ni3A 392 33.57 c.37.1.8,d.15.10.2 80531,80532 2qm8A 337 33.60 2pmkA 243 33.79 2f9lA 199 34.03 c.37.1.8 133166 2yv5A 302 34.14 1cbfA 285 34.28 c.90.1.1 35587 1r0wA 286 34.40 c.37.1.12 96754 2atvA 196 35.75 c.37.1.8 127308 2c81A 418 35.96 1cj3A 392 36.25 c.3.1.2,d.16.1.2 30347,37878 1f5nA 592 36.63 a.114.1.1,c.37.1.8 19077,32152 2b8wA 328 36.96 2g6bA 180 39.82 c.37.1.8 134701 1pjqA 457 40.53 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1gajA 257 40.87 c.37.1.12 60416 2h57A 190 41.24 2bcgY 206 43.13 c.37.1.8 128285 1ky3A 182 43.44 c.37.1.8 73193 1jeiA 53 43.99 a.140.1.1 62918 1xmiA 291 44.00 c.37.1.12 115489 2d2eA 250 44.44 1g291 372 44.97 1sgwA 214 44.99 c.37.1.12 105541 1x1rA 178 45.30 c.37.1.8 121595 2ff7A 247 45.52 c.37.1.12 133377 2j0nA 200 46.36 a.250.1.1 137899 1sltA 134 46.68 b.29.1.3 24186 1g6hA 257 46.90 c.37.1.12 60318 1l7vC 249 46.98 c.37.1.12 73674 2qptA 550 47.60 1z2aA 168 47.97 c.37.1.8 124374 1jj7A 260 49.93 c.37.1.12 63114 1vplA 256 52.17 c.37.1.12 113966 1uptA 171 52.59 c.37.1.8 99767 1gjjA 168 52.78 a.140.1.1,a.140.1.1 83291,83292 1z0jA 170 53.40 c.37.1.8 124319 1zj6A 187 55.53 c.37.1.8 125145 2nq2C 253 55.63 1kshA 186 55.68 c.37.1.8 72914 1z3eB 73 55.80 a.60.3.1 124401 2a9kA 187 56.25 c.37.1.8 126442 1q2kA 31 56.76 g.3.7.2 95630 1vekA 84 57.78 a.5.2.1 113636 1ek0A 170 57.89 c.37.1.8 32076 1uuzA 137 58.24 d.233.1.1 100024 1t9hA 307 60.08 b.40.4.5,c.37.1.8 112358,112359 1qg4A 216 61.93 c.37.1.8 32035 2j69A 695 63.33 2bivA 243 64.06 b.34.9.3,b.34.9.3 128592,128593 1ctqA 166 65.05 c.37.1.8 31965 1r2qA 170 66.54 c.37.1.8 96874 2ffqA 171 66.62 1e0cA 271 68.74 c.46.1.2,c.46.1.2 32717,32718 1z08A 170 69.19 c.37.1.8 124303 2ooiA 162 69.63 1opd 85 71.33 1d1gA 168 71.81 c.71.1.1 34889 1oxsC 353 72.15 b.40.6.3,c.37.1.12 87519,87520 1oxxK 353 74.09 b.40.6.3,c.37.1.12 93715,93716 1b9hA 388 75.16 c.67.1.4 34488 1nkrA 201 77.14 b.1.1.4,b.1.1.4 21799,21800 1ltlA 279 77.68 b.40.4.11 84701 2v9cA 215 78.60 2erxA 172 80.12 c.37.1.8 132304 2a5jA 191 80.36 c.37.1.8 126175 1tzjA 338 81.56 c.79.1.1 112868 1y8xB 98 82.77 1pch 88 86.20 2akaB 299 86.72 c.37.1.8 126914 2aznA 219 87.21 c.71.1.2 127608 2db1A 118 87.53