# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.67e-11 2gcxA 75 7.90e-11 1fx7A 230 2.57e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 4.32e-05 1bi0 226 0.000506 2qq9A 226 0.000709 2dtrA 226 0.000769 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.006624 2qu8A 228 0.2663 1bymA 97 0.3146 b.34.1.2 24458 2e87A 357 0.5604 2cxxA 190 0.6091 c.37.1.8 131013 1lnzA 342 0.7406 b.117.1.1,c.37.1.8 78112,78113 1udxA 416 0.7536 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1pujA 282 1.289 c.37.1.8 88294 1wf3A 301 2.179 c.37.1.8,d.52.3.1 114574,114575 1tq4A 413 2.234 c.37.1.8 107201 2gj8A 172 2.524 c.37.1.8 135270 1sviA 195 4.008 c.37.1.8 106048 2dbyA 368 4.096 1fzqA 181 4.110 c.37.1.8 32060 1puiA 210 4.319 c.37.1.8 88292 2hjgA 436 4.965 1h65A 270 5.325 c.37.1.8 65640 1egaA 301 6.179 c.37.1.8,d.52.3.1 32150,38836 1va0A 239 7.116 c.90.1.1 119899 2qwvA 208 10.51 1pjzA 203 12.80 c.66.1.36 94794 1zd9A 188 14.58 c.37.1.8 124938 2nn8A 138 14.66 b.29.1.3 138392 1oixA 191 15.55 c.37.1.8 118710 1z06A 189 16.94 c.37.1.8 124301 2dykA 161 17.95 1u8zA 168 18.48 c.37.1.8 113212 3bfkA 181 20.47 1nrjB 218 20.98 c.37.1.8 86125 1xtqA 177 22.05 c.37.1.8 122297 2pzeA 229 24.51 2bwjA 199 25.19 1ukvY 206 25.30 c.37.1.8 107918 1sltA 134 25.84 b.29.1.3 24186 2h17A 181 26.41 2dpxA 174 27.42 1tq6A 413 27.79 c.37.1.8 107202 1l2tA 235 28.60 c.37.1.12 73514 2qi9C 249 28.62 2gjsA 176 29.12 c.37.1.8 135287 2bmeA 186 29.85 c.37.1.8 128790 2p5sA 199 31.92 2b8wA 328 32.48 1h9fA 57 33.02 a.140.1.1 60826 1yzqA 170 35.69 c.37.1.8 124286 2c81A 418 36.09 2j0nA 200 36.09 a.250.1.1 137899 2ew1A 201 36.18 c.37.1.8 132446 2yv5A 302 36.23 2ce2X 166 36.52 1x3sA 195 36.60 c.37.1.8 121670 1e0cA 271 36.78 c.46.1.2,c.46.1.2 32717,32718 2cbzA 237 37.10 1m2oB 190 37.24 c.37.1.8 78485 1jeiA 53 37.46 a.140.1.1 62918 1yzgA 179 41.57 c.37.1.8 124276 1ji0A 240 41.95 c.37.1.12 71665 2pmkA 243 42.39 1z2aA 168 45.50 c.37.1.8 124374 2qm8A 337 46.07 2atvA 196 47.61 c.37.1.8 127308 1f5nA 592 47.73 a.114.1.1,c.37.1.8 19077,32152 2pcjA 224 48.05 2h57A 190 48.42 2bbsA 290 48.48 2qptA 550 48.57 2g6bA 180 49.48 c.37.1.8 134701 1nkrA 201 50.15 b.1.1.4,b.1.1.4 21799,21800 1wmsA 177 50.20 c.37.1.8 109414 2f9lA 199 50.82 c.37.1.8 133166 2bcgY 206 52.20 c.37.1.8 128285 1b9hA 388 52.95 c.67.1.4 34488 1gajA 257 53.04 c.37.1.12 60416 1pjqA 457 54.03 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1oivA 191 55.87 c.37.1.8 93076 1opd 85 56.14 1r0wA 286 57.03 c.37.1.12 96754 1b0uA 262 57.48 c.37.1.12 32370 1sgwA 214 59.19 c.37.1.12 105541 1t9hA 307 59.64 b.40.4.5,c.37.1.8 112358,112359 1uuzA 137 60.17 d.233.1.1 100024 2v9cA 215 60.88 1g6hA 257 63.20 c.37.1.12 60318 1vekA 84 63.78 a.5.2.1 113636 1jj7A 260 64.05 c.37.1.12 63114 1uptA 171 65.28 c.37.1.8 99767 1ukzA 203 65.89 c.37.1.1 31840 1z0jA 170 66.05 c.37.1.8 124319 1cbfA 285 66.87 c.90.1.1 35587 1d1gA 168 68.32 c.71.1.1 34889 1g291 372 68.45 1x1rA 178 71.57 c.37.1.8 121595 1ek0A 170 72.20 c.37.1.8 32076 2ffqA 171 72.40 1zj6A 187 72.72 c.37.1.8 125145 1qg4A 216 72.77 c.37.1.8 32035 2qmmA 197 73.21 2ff7A 247 73.29 c.37.1.12 133377 1o6aA 96 73.89 b.139.1.1 92562 1vplA 256 76.23 c.37.1.12 113966 2pz0A 252 76.40 1kshA 186 76.94 c.37.1.8 72914 1ky3A 182 78.09 c.37.1.8 73193 2fjtA 182 79.66 2ooiA 162 80.53 1yfbA 59 81.21 b.129.1.3 123057 1ctqA 166 81.81 c.37.1.8 31965 2akaB 299 82.42 c.37.1.8 126914 1jalA 363 82.81 c.37.1.8,d.15.10.2 84138,84139 1r2qA 170 83.15 c.37.1.8 96874 2d2eA 250 83.35 2j69A 695 85.48 1mdoA 393 85.70 c.67.1.4 79013 2a9kA 187 86.60 c.37.1.8 126442 3bn1A 373 86.98 1pch 88 87.77 1z0rA 53 88.11 b.129.1.3 124326 1oxsC 353 88.79 b.40.6.3,c.37.1.12 87519,87520