# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.67e-13 2gcxA 75 1.10e-12 1fx7A 230 7.80e-07 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 1.14e-05 2dtr 226 9.28e-05 1qw1A 121 0.000104 2dtrA 226 0.000304 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.000344 1bymA 97 0.02148 b.34.1.2 24458 2e87A 357 0.1174 2qu8A 228 0.2006 1pjzA 203 0.4358 c.66.1.36 94794 1lnzA 342 0.4956 b.117.1.1,c.37.1.8 78112,78113 2cxxA 190 0.5149 c.37.1.8 131013 1wf3A 301 0.6449 c.37.1.8,d.52.3.1 114574,114575 1udxA 416 0.7764 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1pujA 282 0.9306 c.37.1.8 88294 1egaA 301 1.080 c.37.1.8,d.52.3.1 32150,38836 2gj8A 172 1.164 c.37.1.8 135270 1tq4A 413 1.692 c.37.1.8 107201 1sviA 195 1.948 c.37.1.8 106048 2dbyA 368 2.853 1jeiA 53 3.462 a.140.1.1 62918 1fzqA 181 3.580 c.37.1.8 32060 2hjgA 436 4.905 1h9fA 57 5.362 a.140.1.1 60826 1puiA 210 6.245 c.37.1.8 88292 2pzeA 229 6.519 1l2tA 235 6.542 c.37.1.12 73514 1h65A 270 7.113 c.37.1.8 65640 2c81A 418 7.465 2gjsA 176 8.221 c.37.1.8 135287 1ji0A 240 9.349 c.37.1.12 71665 2dpxA 174 10.32 2qi9C 249 10.38 1t9hA 307 10.65 b.40.4.5,c.37.1.8 112358,112359 2yv5A 302 10.85 2dykA 161 11.12 1b9hA 388 11.41 c.67.1.4 34488 2inbA 140 11.50 1oixA 191 11.53 c.37.1.8 118710 1va0A 239 12.79 c.90.1.1 119899 2cbzA 237 13.15 3bn1A 373 14.38 2ff7A 247 14.54 c.37.1.12 133377 2pmkA 243 15.02 1opd 85 15.17 2h17A 181 15.79 2pz0A 252 16.36 1zd9A 188 16.99 c.37.1.8 124938 1nrjB 218 17.14 c.37.1.8 86125 1b0uA 262 18.46 c.37.1.12 32370 1vekA 84 18.64 a.5.2.1 113636 1lb2B 84 19.50 a.60.3.1 77871 1u8zA 168 19.53 c.37.1.8 113212 1z06A 189 19.86 c.37.1.8 124301 1mdoA 393 19.90 c.67.1.4 79013 2nn8A 138 20.47 b.29.1.3 138392 2bbsA 290 20.47 2qwvA 208 20.61 1r0wA 286 20.76 c.37.1.12 96754 1tzjA 338 20.89 c.79.1.1 112868 1sgwA 214 21.02 c.37.1.12 105541 3bfkA 181 21.67 1pch 88 21.90 1tq6A 413 22.42 c.37.1.8 107202 1oxxK 353 22.69 b.40.6.3,c.37.1.12 93715,93716 1xmiA 291 22.91 c.37.1.12 115489 2pcjA 224 22.91 1y8xB 98 23.23 1xtqA 177 24.70 c.37.1.8 122297 1sltA 134 24.83 b.29.1.3 24186 1jj7A 260 24.84 c.37.1.12 63114 1oxsC 353 24.92 b.40.6.3,c.37.1.12 87519,87520 1gajA 257 25.35 c.37.1.12 60416 2qh8A 302 26.48 2hmvA 144 26.55 c.2.1.9 136615 1e0cA 271 27.39 c.46.1.2,c.46.1.2 32717,32718 2ogeA 399 27.48 1o69A 394 28.07 c.67.1.4 92560 1o6aA 96 28.08 b.139.1.1 92562 1l7vC 249 28.21 c.37.1.12 73674 1e19A 314 29.21 c.73.1.1 34967 1g6hA 257 29.24 c.37.1.12 60318 2b8wA 328 29.81 2d2eA 250 30.10 1cexA 214 30.98 c.69.1.30 31285 1g291 372 31.13 1gutA 68 32.29 b.40.6.1 65576 1yzqA 170 33.29 c.37.1.8 124286 1d1gA 168 33.35 c.71.1.1 34889 1jx2B 315 33.58 c.37.1.8 67404 1is3A 135 33.68 b.29.1.3 76773 2aznA 219 33.88 c.71.1.2 127608 1rhsA 296 34.49 c.46.1.2,c.46.1.2 32703,32704 1fr3A 67 35.63 b.40.6.1 25436 2j69A 695 35.74 1cj3A 392 35.97 c.3.1.2,d.16.1.2 30347,37878 2nq2C 253 36.01 1z3eB 73 36.02 a.60.3.1 124401 1oivA 191 37.07 c.37.1.8 93076 2ixeA 271 37.46 1vplA 256 38.17 c.37.1.12 113966 2j0nA 200 38.60 a.250.1.1 137899 1gjjA 168 39.07 a.140.1.1,a.140.1.1 83291,83292 1ukvY 206 40.45 c.37.1.8 107918 1eziA 228 41.21 c.68.1.13 34512 2it1A 362 41.30 2nygA 273 41.71 2bwjA 199 41.76 3c6cA 316 42.01 1kshA 186 42.13 c.37.1.8 72914 2v5jA 287 42.98 2bmeA 186 43.13 c.37.1.8 128790 1vg5A 73 43.28 a.5.2.1 113640 2g6bA 180 43.67 c.37.1.8 134701 1wwkA 307 43.88 3cq9A 227 44.02 2vqeN 61 44.18 2gjlA 328 44.49 1x3sA 195 44.78 c.37.1.8 121670 3d64A 494 47.89 2gcgA 330 48.07 1z2aA 168 48.30 c.37.1.8 124374 1ni3A 392 49.17 c.37.1.8,d.15.10.2 80531,80532 1yzgA 179 49.83 c.37.1.8 124276 1ukzA 203 51.13 c.37.1.1 31840 2ew1A 201 51.43 c.37.1.8 132446 2p5sA 199 51.64 1v95A 130 51.75 c.51.1.1 108435 1opdA 85 52.36 d.94.1.1 40560 1o9yA 84 53.00 b.139.1.1 92692 1xwyA 264 53.90 c.1.9.12 122411 2qptA 550 55.03 1z2mA 155 55.26 d.15.1.1,d.15.1.1 124387,124388 1m2oB 190 55.53 c.37.1.8 78485 1mx3A 347 55.73 c.2.1.4,c.23.12.1 79638,79639 2v8pA 271 56.40 2p19A 149 56.70 1fjgN 61 57.31 g.39.1.7 45154 2qf3A 243 58.18 2akaB 299 58.70 c.37.1.8 126914 2uubN 61 58.76 g.39.1.7 139945 2b3zA 373 59.31 c.71.1.2,c.97.1.2 127807,127808 1anf 370 59.38 1zzmA 259 60.47 c.1.9.12 125911 1wmsA 177 61.25 c.37.1.8 109414 1c0nA 406 61.52 c.67.1.3 34433 1bt0A 76 62.12 d.15.1.1 37607 1pchA 88 63.40 d.94.1.1 40564 2pjzA 263 63.68 2ce2X 166 64.09 2mcmA 112 64.41 b.1.7.1 22207 1dv0A 47 64.59 a.5.2.1 16289 1hrkA 359 65.75 c.92.1.1 61228 1ltlA 279 65.76 b.40.4.11 84701 1t3bA 211 66.26 c.47.1.9,d.17.3.1 106341,106342 2glwA 92 66.45 1ezoA 370 67.87 c.94.1.1 59539 1ktbA 405 69.64 b.71.1.1,c.1.8.1 72960,72961 1h9mA 145 70.07 b.40.6.2,b.40.6.2 60833,60834 2j5gA 263 70.16 1a7aA 432 71.33 c.2.1.4,c.23.12.3 30104,31364 1np3A 338 71.34 a.100.1.2,c.2.1.6 85946,85947 1ptfA 88 71.76 d.94.1.1 40549 2d0iA 333 72.01 1fwkA 296 72.07 d.14.1.5,d.58.26.1 37576,39398 2ebiA 86 72.49 2abkA 211 72.92 a.96.1.1 18743 1o54A 277 73.21 c.66.1.13 92482 2eklA 313 73.27 1xdwA 331 74.47 2ooiA 162 74.95 1ptf 88 75.12 2atvA 196 75.28 c.37.1.8 127308 2cukA 311 75.58 2omkA 231 75.89 1z08A 170 76.07 c.37.1.8 124303 2bcgY 206 76.27 c.37.1.8 128285 1z47A 355 76.52 2fjtA 182 76.55 3cxkA 164 77.29 1kcw 1046 78.16 1gs5A 258 78.34 c.73.1.2 70395 1ub4C 85 78.80 b.129.1.1 88401 1w34A 304 78.93 b.43.4.2,c.25.1.1 120620,120621 1wyuA 438 79.16 c.67.1.7 121452 2dbqA 334 80.29 1dxyA 333 80.39 c.2.1.4,c.23.12.1 30094,31354 1pswA 348 80.55 c.87.1.7 88287 1mh3A 421 81.18 a.4.1.1,c.94.1.1 79112,79113 2f9lA 199 81.41 c.37.1.8 133166 2ffqA 171 82.13 1j6oA 268 82.74 c.1.9.12 77088 2k0qA 74 82.88 2oq1A 254 82.93 d.93.1.1,d.93.1.1 139220,139221 1dxy 333 83.01 1zj6A 187 83.27 c.37.1.8 125145 1lssA 140 84.09 c.2.1.9 74246 1q2kA 31 84.24 g.3.7.2 95630 1jb9A 316 85.40 b.43.4.2,c.25.1.1 62840,62841 1qmgA 524 86.05 a.100.1.2,c.2.1.6 18785,30182 1l1jA 239 86.21 b.47.1.1 84516 1wg8A 285 86.57 a.60.13.1,c.66.1.23 114605,114606 1ky3A 182 88.10 c.37.1.8 73193 1uptA 171 88.97 c.37.1.8 99767