# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 4.45e-12 2gcxA 75 1.74e-11 1fx7A 230 1.29e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 2.62e-05 2qq9A 226 0.000149 1bi0 226 0.000204 2dtrA 226 0.000491 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.002502 1udxA 416 0.2564 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2qu8A 228 0.2730 1lnzA 342 0.3018 b.117.1.1,c.37.1.8 78112,78113 2e87A 357 0.4431 1bymA 97 0.6624 b.34.1.2 24458 2cxxA 190 0.7833 c.37.1.8 131013 1pujA 282 1.151 c.37.1.8 88294 2dbyA 368 1.981 1pjzA 203 2.102 c.66.1.36 94794 1sviA 195 2.261 c.37.1.8 106048 1puiA 210 2.982 c.37.1.8 88292 1wf3A 301 3.302 c.37.1.8,d.52.3.1 114574,114575 1tq4A 413 3.490 c.37.1.8 107201 2gj8A 172 3.511 c.37.1.8 135270 1fzqA 181 3.808 c.37.1.8 32060 2hjgA 436 4.745 1egaA 301 5.188 c.37.1.8,d.52.3.1 32150,38836 1va0A 239 6.176 c.90.1.1 119899 1oixA 191 8.005 c.37.1.8 118710 1zd9A 188 10.23 c.37.1.8 124938 3bfkA 181 12.13 1nrjB 218 13.51 c.37.1.8 86125 1u8zA 168 13.80 c.37.1.8 113212 2gjsA 176 13.87 c.37.1.8 135287 2bwjA 199 14.28 1h65A 270 14.54 c.37.1.8 65640 1z06A 189 15.62 c.37.1.8 124301 2c81A 418 17.11 1xtqA 177 17.74 c.37.1.8 122297 1oivA 191 18.09 c.37.1.8 93076 2dpxA 174 18.69 2qwvA 208 20.76 1cj3A 392 22.48 c.3.1.2,d.16.1.2 30347,37878 1l2tA 235 22.88 c.37.1.12 73514 1tq6A 413 23.10 c.37.1.8 107202 1ukzA 203 24.20 c.37.1.1 31840 2dykA 161 24.95 2bmeA 186 27.03 c.37.1.8 128790 2pzeA 229 27.43 1ukvY 206 27.53 c.37.1.8 107918 2v9cA 215 28.95 2ew1A 201 29.40 c.37.1.8 132446 1wmsA 177 30.45 c.37.1.8 109414 1b9hA 388 30.71 c.67.1.4 34488 1x3sA 195 31.09 c.37.1.8 121670 2p5sA 199 31.52 2h17A 181 32.66 1sltA 134 33.14 b.29.1.3 24186 1ji0A 240 34.35 c.37.1.12 71665 2ff7A 247 34.63 c.37.1.12 133377 2cbzA 237 35.72 2j0nA 200 35.79 a.250.1.1 137899 1jeiA 53 36.59 a.140.1.1 62918 2pcjA 224 37.00 2qi9C 249 37.46 1m2oB 190 38.53 c.37.1.8 78485 3c6cA 316 38.90 2nn8A 138 40.81 b.29.1.3 138392 1yzqA 170 43.68 c.37.1.8 124286 1yzgA 179 44.25 c.37.1.8 124276 2f9lA 199 44.28 c.37.1.8 133166 1ni3A 392 45.09 c.37.1.8,d.15.10.2 80531,80532 1mdoA 393 45.31 c.67.1.4 79013 1gjjA 168 45.92 a.140.1.1,a.140.1.1 83291,83292 1t9hA 307 46.47 b.40.4.5,c.37.1.8 112358,112359 2ce2X 166 46.83 2bcgY 206 46.99 c.37.1.8 128285 3bn1A 373 47.83 1b0uA 262 48.91 c.37.1.12 32370 1gajA 257 49.23 c.37.1.12 60416 1sgwA 214 49.68 c.37.1.12 105541 2yv5A 302 49.86 1z3eB 73 50.37 a.60.3.1 124401 1z2aA 168 50.55 c.37.1.8 124374 2atvA 196 50.85 c.37.1.8 127308 2pmkA 243 50.86 2hmvA 144 50.99 c.2.1.9 136615 2qm8A 337 51.93 1x1rA 178 52.48 c.37.1.8 121595 1h9fA 57 53.11 a.140.1.1 60826 1d1gA 168 53.18 c.71.1.1 34889 2g6bA 180 54.28 c.37.1.8 134701 2aznA 219 55.01 c.71.1.2 127608 1e0cA 271 58.54 c.46.1.2,c.46.1.2 32717,32718 2a5jA 191 61.75 c.37.1.8 126175 2h57A 190 61.89 1o69A 394 63.53 c.67.1.4 92560 1tzjA 338 64.15 c.79.1.1 112868 2a9kA 187 65.63 c.37.1.8 126442 1dxy 333 68.84 2bbsA 290 69.69 1lb2B 84 71.79 a.60.3.1 77871 1g291 372 71.97 1ltlA 279 73.29 b.40.4.11 84701 1z0jA 170 73.37 c.37.1.8 124319 2auwA 170 73.55 a.35.1.10,d.331.1.1 127339,127340 1pjqA 457 73.67 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1zj6A 187 74.36 c.37.1.8 125145 2qptA 550 74.51 1uptA 171 75.99 c.37.1.8 99767 1jx2B 315 77.90 c.37.1.8 67404 1uuzA 137 77.99 d.233.1.1 100024 1g6hA 257 78.95 c.37.1.12 60318 1zzmA 259 79.10 c.1.9.12 125911 1oxxK 353 79.56 b.40.6.3,c.37.1.12 93715,93716 2k0qA 74 79.84 2db1A 118 80.06 1oxsC 353 80.56 b.40.6.3,c.37.1.12 87519,87520 1is3A 135 80.88 b.29.1.3 76773 1r9cA 139 81.24 d.32.1.2 97255 1jm6A 407 82.14 a.29.5.1,d.122.1.4 66876,66877 2j69A 695 82.48 2d2eA 250 83.57 1j6oA 268 85.03 c.1.9.12 77088 1r2qA 170 85.84 c.37.1.8 96874 2ffqA 171 85.91 2inbA 140 86.32 2akaB 299 86.33 c.37.1.8 126914 2ogeA 399 87.21 1ek0A 170 89.86 c.37.1.8 32076