# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.04e-12 2gcxA 75 1.19e-11 1fx7A 230 1.56e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 2.36e-05 2qq9A 226 8.54e-05 1bi0 226 0.000187 2dtrA 226 0.000441 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.002836 2qu8A 228 0.2212 1udxA 416 0.2578 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1lnzA 342 0.2750 b.117.1.1,c.37.1.8 78112,78113 2e87A 357 0.5628 2cxxA 190 0.7146 c.37.1.8 131013 1bymA 97 0.9233 b.34.1.2 24458 1pujA 282 1.296 c.37.1.8 88294 2dbyA 368 1.596 1sviA 195 2.041 c.37.1.8 106048 1pjzA 203 2.136 c.66.1.36 94794 1puiA 210 2.583 c.37.1.8 88292 1wf3A 301 3.389 c.37.1.8,d.52.3.1 114574,114575 2gj8A 172 3.416 c.37.1.8 135270 1tq4A 413 3.505 c.37.1.8 107201 1fzqA 181 3.532 c.37.1.8 32060 2hjgA 436 4.677 1egaA 301 6.278 c.37.1.8,d.52.3.1 32150,38836 1oixA 191 8.938 c.37.1.8 118710 1va0A 239 9.704 c.90.1.1 119899 1zd9A 188 10.16 c.37.1.8 124938 1nrjB 218 12.38 c.37.1.8 86125 3bfkA 181 12.51 2gjsA 176 14.79 c.37.1.8 135287 1u8zA 168 16.13 c.37.1.8 113212 1z06A 189 16.38 c.37.1.8 124301 2qwvA 208 17.05 1xtqA 177 18.51 c.37.1.8 122297 1oivA 191 20.04 c.37.1.8 93076 2bwjA 199 20.20 2dpxA 174 21.40 2c81A 418 22.10 1h65A 270 22.79 c.37.1.8 65640 2v9cA 215 24.85 1tq6A 413 25.75 c.37.1.8 107202 2j0nA 200 27.45 a.250.1.1 137899 2dykA 161 28.46 1l2tA 235 29.04 c.37.1.12 73514 1jeiA 53 30.04 a.140.1.1 62918 2bmeA 186 30.13 c.37.1.8 128790 2p5sA 199 30.30 1ukvY 206 30.79 c.37.1.8 107918 2pzeA 229 31.00 2ew1A 201 32.28 c.37.1.8 132446 1ji0A 240 32.41 c.37.1.12 71665 1wmsA 177 33.12 c.37.1.8 109414 2h17A 181 33.15 1x3sA 195 33.95 c.37.1.8 121670 2cbzA 237 34.68 1b9hA 388 34.72 c.67.1.4 34488 2qi9C 249 36.17 1sltA 134 36.68 b.29.1.3 24186 2nn8A 138 36.78 b.29.1.3 138392 1ukzA 203 36.99 c.37.1.1 31840 1yzgA 179 37.78 c.37.1.8 124276 1h9fA 57 38.61 a.140.1.1 60826 1b0uA 262 39.68 c.37.1.12 32370 1gjjA 168 39.78 a.140.1.1,a.140.1.1 83291,83292 2pcjA 224 40.42 2ff7A 247 41.61 c.37.1.12 133377 1m2oB 190 42.39 c.37.1.8 78485 1t9hA 307 44.15 b.40.4.5,c.37.1.8 112358,112359 2ce2X 166 44.22 1uuzA 137 46.77 d.233.1.1 100024 2qm8A 337 46.79 1ni3A 392 47.91 c.37.1.8,d.15.10.2 80531,80532 1sgwA 214 48.59 c.37.1.12 105541 1yzqA 170 49.06 c.37.1.8 124286 1gajA 257 49.13 c.37.1.12 60416 2f9lA 199 49.16 c.37.1.8 133166 1mdoA 393 49.59 c.67.1.4 79013 1tzjA 338 52.30 c.79.1.1 112868 1z3eB 73 53.82 a.60.3.1 124401 2yv5A 302 54.63 2bcgY 206 54.63 c.37.1.8 128285 2atvA 196 56.75 c.37.1.8 127308 1lb2B 84 57.33 a.60.3.1 77871 2pmkA 243 57.80 3bn1A 373 58.86 1x1rA 178 59.44 c.37.1.8 121595 2aznA 219 60.20 c.71.1.2 127608 2db1A 118 60.28 1q15A 503 60.40 c.26.2.1,d.153.1.1 95538,95539 1ltlA 279 61.37 b.40.4.11 84701 1z2aA 168 62.33 c.37.1.8 124374 2g6bA 180 62.71 c.37.1.8 134701 1d1gA 168 64.24 c.71.1.1 34889 2bbsA 290 64.47 1oxsC 353 67.01 b.40.6.3,c.37.1.12 87519,87520 1cj3A 392 67.06 c.3.1.2,d.16.1.2 30347,37878 2qptA 550 67.21 1g291 372 67.22 1oxxK 353 68.57 b.40.6.3,c.37.1.12 93715,93716 3c6cA 316 68.97 1vekA 84 70.50 a.5.2.1 113636 1e0cA 271 70.55 c.46.1.2,c.46.1.2 32717,32718 2a5jA 191 70.59 c.37.1.8 126175 1jx2B 315 71.92 c.37.1.8 67404 2a9kA 187 71.98 c.37.1.8 126442 2hmvA 144 72.95 c.2.1.9 136615 1lbqA 362 77.65 c.92.1.1 77877 1g6hA 257 82.03 c.37.1.12 60318 1zj6A 187 83.81 c.37.1.8 125145 2j69A 695 84.94 1ek0A 170 85.25 c.37.1.8 32076 1z0jA 170 86.13 c.37.1.8 124319 1jalA 363 86.44 c.37.1.8,d.15.10.2 84138,84139 2b8wA 328 87.05 2h57A 190 87.83 1pjqA 457 88.51 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2auwA 170 88.53 a.35.1.10,d.331.1.1 127339,127340 1vplA 256 88.59 c.37.1.12 113966 2ffqA 171 88.75 1uptA 171 88.92 c.37.1.8 99767 2akaB 299 89.45 c.37.1.8 126914