# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.67e-12 2gcxA 75 5.50e-12 2dtr 226 1.31e-05 1fx7A 230 1.37e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 4.76e-05 1bi0 226 0.000136 2dtrA 226 0.000323 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.001705 1udxA 416 0.2624 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1lnzA 342 0.2692 b.117.1.1,c.37.1.8 78112,78113 2qu8A 228 0.2908 2e87A 357 0.6711 1bymA 97 0.7054 b.34.1.2 24458 2cxxA 190 1.042 c.37.1.8 131013 2dbyA 368 1.392 1pujA 282 1.537 c.37.1.8 88294 1pjzA 203 1.797 c.66.1.36 94794 1sviA 195 3.182 c.37.1.8 106048 1wf3A 301 3.420 c.37.1.8,d.52.3.1 114574,114575 1tq4A 413 3.728 c.37.1.8 107201 1puiA 210 3.992 c.37.1.8 88292 2gj8A 172 4.318 c.37.1.8 135270 2hjgA 436 4.972 1fzqA 181 5.189 c.37.1.8 32060 1va0A 239 7.382 c.90.1.1 119899 1egaA 301 7.542 c.37.1.8,d.52.3.1 32150,38836 1oixA 191 11.47 c.37.1.8 118710 2qwvA 208 13.68 1zd9A 188 13.89 c.37.1.8 124938 2bwjA 199 16.45 2gjsA 176 18.60 c.37.1.8 135287 2nn8A 138 19.51 b.29.1.3 138392 1u8zA 168 19.58 c.37.1.8 113212 3bfkA 181 20.11 1z06A 189 21.32 c.37.1.8 124301 2v9cA 215 21.53 1sltA 134 22.14 b.29.1.3 24186 1nrjB 218 22.23 c.37.1.8 86125 1oivA 191 24.71 c.37.1.8 93076 1xtqA 177 25.04 c.37.1.8 122297 1cj3A 392 26.32 c.3.1.2,d.16.1.2 30347,37878 1ukzA 203 27.00 c.37.1.1 31840 2c81A 418 27.75 1jeiA 53 27.87 a.140.1.1 62918 1h65A 270 28.14 c.37.1.8 65640 2dpxA 174 28.53 2j0nA 200 29.48 a.250.1.1 137899 1b9hA 388 37.77 c.67.1.4 34488 1tq6A 413 37.78 c.37.1.8 107202 1gjjA 168 38.38 a.140.1.1,a.140.1.1 83291,83292 2bmeA 186 38.78 c.37.1.8 128790 2qi9C 249 38.95 2pzeA 229 40.83 1h9fA 57 40.99 a.140.1.1 60826 2p5sA 199 41.60 1ni3A 392 41.79 c.37.1.8,d.15.10.2 80531,80532 2ew1A 201 42.95 c.37.1.8 132446 1ukvY 206 43.39 c.37.1.8 107918 1ji0A 240 43.88 c.37.1.12 71665 1l2tA 235 46.07 c.37.1.12 73514 1wmsA 177 47.12 c.37.1.8 109414 1x3sA 195 47.59 c.37.1.8 121670 1uuzA 137 48.63 d.233.1.1 100024 2h17A 181 49.10 1b0uA 262 51.28 c.37.1.12 32370 2dykA 161 51.67 2pcjA 224 53.70 2qm8A 337 53.83 2ce2X 166 54.40 2cbzA 237 54.43 1z3eB 73 55.02 a.60.3.1 124401 1m2oB 190 56.88 c.37.1.8 78485 2db1A 118 57.15 1mdoA 393 57.18 c.67.1.4 79013 2auwA 170 58.38 a.35.1.10,d.331.1.1 127339,127340 1yzqA 170 60.38 c.37.1.8 124286 3c6cA 316 60.55 2ff7A 247 61.50 c.37.1.12 133377 1r9cA 139 62.90 d.32.1.2 97255 1tzjA 338 64.54 c.79.1.1 112868 1yzgA 179 64.64 c.37.1.8 124276 1vekA 84 65.09 a.5.2.1 113636 1gajA 257 65.33 c.37.1.12 60416 1e0cA 271 67.02 c.46.1.2,c.46.1.2 32717,32718 1d1gA 168 70.41 c.71.1.1 34889 2hmvA 144 71.67 c.2.1.9 136615 2bivA 243 72.20 b.34.9.3,b.34.9.3 128592,128593 3cxkA 164 72.36 1sgwA 214 72.81 c.37.1.12 105541 3bn1A 373 73.62 1lb2B 84 73.84 a.60.3.1 77871 2atvA 196 75.72 c.37.1.8 127308 2g6bA 180 76.05 c.37.1.8 134701 2aznA 219 76.23 c.71.1.2 127608 1pjqA 457 77.25 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2pmkA 243 77.39 1z2aA 168 77.73 c.37.1.8 124374 1t9hA 307 79.05 b.40.4.5,c.37.1.8 112358,112359 1nkrA 201 79.11 b.1.1.4,b.1.1.4 21799,21800 2f9lA 199 80.19 c.37.1.8 133166 1q15A 503 81.10 c.26.2.1,d.153.1.1 95538,95539 2qmmA 197 81.62 1x1rA 178 81.86 c.37.1.8 121595 2bcgY 206 82.30 c.37.1.8 128285 1jx2B 315 82.63 c.37.1.8 67404 2ealA 148 85.48 1ltlA 279 87.13 b.40.4.11 84701 2bbsA 290 87.44 1j6oA 268 88.43 c.1.9.12 77088 1lbqA 362 89.11 c.92.1.1 77877