# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 2.71e-09 2gcxA 75 3.76e-09 1bi0 226 0.002460 1fx7A 230 0.003153 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.01347 2dtr 226 0.02583 2qq9A 226 0.03360 2dtrA 226 0.04294 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1bymA 97 0.8941 b.34.1.2 24458 1pjzA 203 1.621 c.66.1.36 94794 1lnzA 342 2.800 b.117.1.1,c.37.1.8 78112,78113 1udxA 416 3.038 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1pujA 282 4.062 c.37.1.8 88294 1wf3A 301 4.707 c.37.1.8,d.52.3.1 114574,114575 2cxxA 190 4.973 c.37.1.8 131013 2qu8A 228 5.000 1tq4A 413 5.966 c.37.1.8 107201 2dbyA 368 6.798 2e87A 357 8.503 1fzqA 181 8.795 c.37.1.8 32060 2gj8A 172 10.38 c.37.1.8 135270 1ni3A 392 11.21 c.37.1.8,d.15.10.2 80531,80532 1oixA 191 14.44 c.37.1.8 118710 1va0A 239 17.95 c.90.1.1 119899 1zd9A 188 18.52 c.37.1.8 124938 1oivA 191 19.36 c.37.1.8 93076 2dykA 161 19.43 1u8zA 168 19.48 c.37.1.8 113212 1cj3A 392 19.84 c.3.1.2,d.16.1.2 30347,37878 3cxkA 164 20.01 1vekA 84 20.71 a.5.2.1 113636 1tq6A 413 21.76 c.37.1.8 107202 1z06A 189 21.92 c.37.1.8 124301 1sviA 195 22.87 c.37.1.8 106048 1xtqA 177 23.42 c.37.1.8 122297 2hjgA 436 25.96 1jeiA 53 26.06 a.140.1.1 62918 1e0cA 271 29.55 c.46.1.2,c.46.1.2 32717,32718 1wmsA 177 32.52 c.37.1.8 109414 2bmeA 186 33.49 c.37.1.8 128790 3bfkA 181 36.48 1x3sA 195 37.60 c.37.1.8 121670 2p5sA 199 38.89 1puiA 210 39.24 c.37.1.8 88292 1rhsA 296 42.27 c.46.1.2,c.46.1.2 32703,32704 2gjsA 176 42.92 c.37.1.8 135287 1z3eB 73 43.42 a.60.3.1 124401 2ew1A 201 43.44 c.37.1.8 132446 1x1rA 178 44.37 c.37.1.8 121595 1h9fA 57 44.55 a.140.1.1 60826 1dkqA 410 44.56 c.60.1.2 33998 2g6bA 180 46.91 c.37.1.8 134701 1ukvY 206 48.62 c.37.1.8 107918 1m2oB 190 50.11 c.37.1.8 78485 1h65A 270 50.66 c.37.1.8 65640 2dpxA 174 51.99 1uptA 171 52.51 c.37.1.8 99767 1cbfA 285 54.08 c.90.1.1 35587 1egaA 301 58.64 c.37.1.8,d.52.3.1 32150,38836 2dvzA 314 60.42 2db1A 118 62.68 2ce2X 166 63.22 2qpqA 301 65.89 1ktbA 405 68.30 b.71.1.1,c.1.8.1 72960,72961 1ctqA 166 69.86 c.37.1.8 31965 2h17A 181 69.94 2atvA 196 70.01 c.37.1.8 127308 2h57A 190 71.24 1jalA 363 73.68 c.37.1.8,d.15.10.2 84138,84139 2bcgY 206 74.18 c.37.1.8 128285 1lb2B 84 74.59 a.60.3.1 77871 1sltA 134 74.91 b.29.1.3 24186 1ky3A 182 75.37 c.37.1.8 73193 1yzqA 170 75.63 c.37.1.8 124286 1ek0A 170 78.23 c.37.1.8 32076 2f9lA 199 79.16 c.37.1.8 133166 2bwjA 199 79.60 2j0nA 200 80.19 a.250.1.1 137899 2qi9C 249 80.22 2p10A 286 81.72 1z0jA 170 82.88 c.37.1.8 124319 2v5jA 287 84.49 3c5cA 187 84.75 1nrjB 218 87.42 c.37.1.8 86125 2a9kA 187 89.49 c.37.1.8 126442