# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.11e-11 2gcxA 75 5.94e-11 2dtr 226 2.36e-05 1fx7A 230 2.47e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.000227 1bi0 226 0.000257 2dtrA 226 0.000728 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.002274 2qu8A 228 0.3812 1lnzA 342 0.4358 b.117.1.1,c.37.1.8 78112,78113 1bymA 97 0.5819 b.34.1.2 24458 2cxxA 190 0.7880 c.37.1.8 131013 2e87A 357 1.236 1pujA 282 1.504 c.37.1.8 88294 1udxA 416 1.748 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2dbyA 368 2.973 2gj8A 172 3.254 c.37.1.8 135270 1wf3A 301 3.810 c.37.1.8,d.52.3.1 114574,114575 1tq4A 413 3.820 c.37.1.8 107201 1puiA 210 3.854 c.37.1.8 88292 1sviA 195 4.118 c.37.1.8 106048 1fzqA 181 4.192 c.37.1.8 32060 1pjzA 203 5.313 c.66.1.36 94794 1egaA 301 6.886 c.37.1.8,d.52.3.1 32150,38836 1va0A 239 7.543 c.90.1.1 119899 2hjgA 436 7.875 1oixA 191 13.04 c.37.1.8 118710 1zd9A 188 13.56 c.37.1.8 124938 1u8zA 168 13.71 c.37.1.8 113212 2gjsA 176 15.67 c.37.1.8 135287 2bwjA 199 17.27 1z06A 189 17.31 c.37.1.8 124301 2dykA 161 17.72 3bfkA 181 18.00 1xtqA 177 19.27 c.37.1.8 122297 1nrjB 218 19.43 c.37.1.8 86125 1oivA 191 20.19 c.37.1.8 93076 1h65A 270 20.57 c.37.1.8 65640 2dpxA 174 22.56 2qwvA 208 23.56 1l2tA 235 25.79 c.37.1.12 73514 2c81A 418 26.21 2h17A 181 26.94 2p5sA 199 27.16 1x3sA 195 27.18 c.37.1.8 121670 1cj3A 392 29.30 c.3.1.2,d.16.1.2 30347,37878 2bmeA 186 29.36 c.37.1.8 128790 1b9hA 388 29.87 c.67.1.4 34488 2pzeA 229 30.02 2qi9C 249 30.54 2v9cA 215 31.50 1tq6A 413 31.67 c.37.1.8 107202 2ew1A 201 31.92 c.37.1.8 132446 2ce2X 166 33.59 2cbzA 237 33.80 1ukvY 206 34.25 c.37.1.8 107918 2inbA 140 38.15 1wmsA 177 39.62 c.37.1.8 109414 1m2oB 190 43.39 c.37.1.8 78485 1sltA 134 43.60 b.29.1.3 24186 1jeiA 53 45.43 a.140.1.1 62918 1yzqA 170 45.89 c.37.1.8 124286 2j0nA 200 47.55 a.250.1.1 137899 1yzgA 179 48.47 c.37.1.8 124276 1vekA 84 48.57 a.5.2.1 113636 2hmvA 144 49.12 c.2.1.9 136615 2bbsA 290 49.41 2ff7A 247 49.69 c.37.1.12 133377 1rhsA 296 50.18 c.46.1.2,c.46.1.2 32703,32704 2nn8A 138 51.59 b.29.1.3 138392 1ukzA 203 51.89 c.37.1.1 31840 2pmkA 243 52.16 2g6bA 180 53.67 c.37.1.8 134701 2pcjA 224 53.86 1gajA 257 56.32 c.37.1.12 60416 1z0jA 170 56.76 c.37.1.8 124319 1b0uA 262 58.65 c.37.1.12 32370 2yv5A 302 58.75 1gjjA 168 59.12 a.140.1.1,a.140.1.1 83291,83292 2a9kA 187 60.00 c.37.1.8 126442 1mdoA 393 60.29 c.67.1.4 79013 2bcgY 206 60.32 c.37.1.8 128285 1ltlA 279 60.81 b.40.4.11 84701 3cxkA 164 60.95 1r2qA 170 60.95 c.37.1.8 96874 1r0wA 286 61.61 c.37.1.12 96754 2atvA 196 61.65 c.37.1.8 127308 1sgwA 214 61.78 c.37.1.12 105541 1l7vC 249 62.76 c.37.1.12 73674 2qm8A 337 63.42 1z2aA 168 63.80 c.37.1.8 124374 1ky3A 182 64.67 c.37.1.8 73193 1h9fA 57 65.03 a.140.1.1 60826 1ji0A 240 66.53 c.37.1.12 71665 2b8wA 328 66.97 1lb2B 84 67.63 a.60.3.1 77871 1o69A 394 68.00 c.67.1.4 92560 1o6aA 96 68.38 b.139.1.1 92562 1ctqA 166 68.39 c.37.1.8 31965 1vplA 256 68.92 c.37.1.12 113966 1z3eB 73 69.02 a.60.3.1 124401 3c6cA 316 71.03 1t9hA 307 72.04 b.40.4.5,c.37.1.8 112358,112359 1jj7A 260 72.79 c.37.1.12 63114 1d1gA 168 72.87 c.71.1.1 34889 2aznA 219 73.12 c.71.1.2 127608 1cbfA 285 73.86 c.90.1.1 35587 1e0cA 271 74.08 c.46.1.2,c.46.1.2 32717,32718 1ek0A 170 76.09 c.37.1.8 32076 2j69A 695 76.18 1x1rA 178 76.66 c.37.1.8 121595 1g291 372 76.77 1uptA 171 76.97 c.37.1.8 99767 1oxsC 353 77.54 b.40.6.3,c.37.1.12 87519,87520 2k0qA 74 78.23 1qg4A 216 78.77 c.37.1.8 32035 3bn1A 373 79.48 1oxxK 353 79.63 b.40.6.3,c.37.1.12 93715,93716 1f5nA 592 80.14 a.114.1.1,c.37.1.8 19077,32152 2auwA 170 84.48 a.35.1.10,d.331.1.1 127339,127340 1fwkA 296 85.69 d.14.1.5,d.58.26.1 37576,39398 1m6nA 802 86.11 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 2a5jA 191 87.40 c.37.1.8 126175 1pswA 348 88.89 c.87.1.7 88287 2ogeA 399 89.09