# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 4.02e-12 2gcxA 75 1.96e-11 1fx7A 230 1.49e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 1.71e-05 2dtrA 226 0.000633 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.001343 1bi0 226 0.001736 2qq9A 226 0.001813 1lnzA 342 0.2429 b.117.1.1,c.37.1.8 78112,78113 1bymA 97 0.3413 b.34.1.2 24458 2cxxA 190 0.7770 c.37.1.8 131013 1udxA 416 1.201 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1pujA 282 1.409 c.37.1.8 88294 2dc1A 236 1.875 2dbyA 368 1.903 2qu8A 228 2.068 1puiA 210 2.334 c.37.1.8 88292 1sviA 195 3.435 c.37.1.8 106048 2gj8A 172 3.463 c.37.1.8 135270 1h65A 270 3.528 c.37.1.8 65640 2hjgA 436 4.765 2as0A 396 4.827 b.122.1.9,c.66.1.51 127227,127228 1arhA 396 4.978 c.67.1.1 34321 1eejA 216 5.173 c.47.1.9,d.17.3.1 33057,38071 2qf3A 243 7.342 2qwvA 208 7.488 1sltA 134 8.291 b.29.1.3 24186 2qedA 258 9.195 1ri6A 343 9.220 b.69.11.1 97503 1vplA 256 9.412 c.37.1.12 113966 1ky9A 448 9.894 b.36.1.4,b.47.1.1 73198,73199 1w0pA 781 10.69 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2j69A 695 10.88 2qi9C 249 10.94 2r0cA 549 11.62 1rhsA 296 12.27 c.46.1.2,c.46.1.2 32703,32704 1oixA 191 12.32 c.37.1.8 118710 2v74B 346 12.42 1sotA 320 12.87 b.36.1.4,b.47.1.1 105852,105853 1wxxA 382 13.54 b.122.1.9,c.66.1.51 121418,121419 1u8zA 168 13.68 c.37.1.8 113212 2nn8A 138 13.89 b.29.1.3 138392 1z06A 189 16.54 c.37.1.8 124301 1nrjB 218 17.46 c.37.1.8 86125 2gjsA 176 17.57 c.37.1.8 135287 3bfkA 181 17.65 2o9cA 342 17.91 1q0qA 406 18.59 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2qdfA 335 18.66 2g8sA 353 18.68 1suuA 312 19.91 b.68.10.1 99006 1oivA 191 21.33 c.37.1.8 93076 1j9qA 341 21.63 b.6.1.3,b.6.1.3 62765,62766 1g6hA 257 22.22 c.37.1.12 60318 1fi8A 228 22.52 b.47.1.2 26374 1woqA 267 23.15 c.55.1.10,c.55.1.10 109462,109463 2it1A 362 25.04 1a53 247 25.58 2p5sA 199 26.08 2yv5A 302 26.84 2dpxA 174 27.38 1ezvD 245 28.25 a.3.1.3,f.23.11.1 59546,59547 1t1iA 364 28.57 c.41.1.2 106248 1cghA 224 29.48 b.47.1.2 26290 1sc6A 404 29.73 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1po0A 751 30.22 f.4.3.3 94960 1x3sA 195 30.84 c.37.1.8 121670 3bk5A 237 31.31 2bmeA 186 31.55 c.37.1.8 128790 1l2tA 235 32.62 c.37.1.12 73514 2zbvA 263 32.83 1aw2A 256 32.89 c.1.1.1 28523 1lbqA 362 33.71 c.92.1.1 77877 1xmiA 291 33.89 c.37.1.12 115489 1jj7A 260 34.06 c.37.1.12 63114 1oxsC 353 34.36 b.40.6.3,c.37.1.12 87519,87520 2r7dA 469 34.39 2z8gA 549 34.87 2f9lA 199 34.99 c.37.1.8 133166 1wmsA 177 35.09 c.37.1.8 109414 1sw2A 275 35.46 c.94.1.1 106064 4bclA 366 35.67 b.75.1.1 27968 2v9cA 215 36.61 1tq4A 413 36.67 c.37.1.8 107201 1zy9A 564 37.28 b.30.5.11,c.1.8.13 125813,125814 1m2oB 190 37.42 c.37.1.8 78485 1ukvY 206 38.17 c.37.1.8 107918 1r17A 343 39.51 b.2.3.4,b.2.3.4 96796,96797 1efpB 252 40.72 c.26.2.3 31636 1ni3A 392 40.98 c.37.1.8,d.15.10.2 80531,80532 2g6bA 180 44.29 c.37.1.8 134701 2gl6A 392 45.67 2a67A 167 46.00 2pcjA 224 46.01 1jeiA 53 46.16 a.140.1.1 62918 2atvA 196 46.30 c.37.1.8 127308 1yzqA 170 46.90 c.37.1.8 124286 1at0 145 46.91 2dsjA 423 47.15 1r9cA 139 47.22 d.32.1.2 97255 1egaA 301 47.49 c.37.1.8,d.52.3.1 32150,38836 1va0A 239 48.35 c.90.1.1 119899 1p1jA 533 49.25 c.2.1.3,d.81.1.3 87687,87688 1wf3A 301 50.16 c.37.1.8,d.52.3.1 114574,114575 2ap1A 327 50.79 c.55.1.10,c.55.1.10 127108,127109 2ff7A 247 51.01 c.37.1.12 133377 3c24A 286 51.20 2ooiA 162 51.31 1a7lA 389 52.37 c.94.1.1 35787 1oe1A 336 53.29 b.6.1.3,b.6.1.3 86891,86892 1anf 370 53.54 1ztuA 341 53.84 1fcdA 401 53.92 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1x1rA 178 54.45 c.37.1.8 121595 2bbsA 290 54.91 1y8tA 324 56.00 b.36.1.4,b.47.1.1 122763,122764 1cj3A 392 56.90 c.3.1.2,d.16.1.2 30347,37878 1xadA 345 57.20 c.77.1.1 35055 1ky3A 182 57.76 c.37.1.8 73193 2auwA 170 58.73 a.35.1.10,d.331.1.1 127339,127340 1wrbA 253 58.99 c.37.1.19 121192 2b8wA 328 59.12 1jroA 462 59.78 a.56.1.1,d.15.4.2,d.87.2.1,d.145.1.3 67137,67138,67139,67140 1z0jA 170 60.17 c.37.1.8 124319 2hhiA 204 60.42 1f46A 140 60.88 d.129.4.1 59643 2oajA 902 60.92 1sgwA 214 61.08 c.37.1.12 105541 1r2qA 170 61.44 c.37.1.8 96874 1qfhA 212 62.21 b.1.18.10,b.1.18.10 21893,21894 1ukzA 203 62.52 c.37.1.1 31840 1z2aA 168 62.70 c.37.1.8 124374 1h9fA 57 64.10 a.140.1.1 60826 2yy3A 91 64.71 1dboA 506 64.76 b.80.1.4 28034 1gzwA 134 65.10 b.29.1.3 90535 2gc1A 188 65.21 b.82.1.7 134928 2pmkA 243 65.26 1pjzA 203 66.00 c.66.1.36 94794 1y8oA 419 66.55 2ealA 148 66.64 1nkrA 201 66.80 b.1.1.4,b.1.1.4 21799,21800 1dbgA 506 67.09 b.80.1.4 28033 3cxkA 164 67.53 2a9kA 187 68.38 c.37.1.8 126442 1ctqA 166 71.29 c.37.1.8 31965 2bcgY 206 71.41 c.37.1.8 128285 1o6aA 96 72.03 b.139.1.1 92562 1g291 372 72.41 1uptA 171 73.79 c.37.1.8 99767 1ppjD 241 75.19 a.3.1.3,f.23.11.1 104258,104259 1bio 228 75.62 1cfbA 205 76.37 b.1.2.1,b.1.2.1 21991,21992 2a5jA 191 76.90 c.37.1.8 126175 1x0cA 549 77.19 3b85A 208 77.61 2dg1A 333 79.55 b.68.6.1 131493 2fomB 185 80.22 b.47.1.3 133884 1te0A 318 80.82 b.36.1.4,b.47.1.1 112400,112401 1oxxK 353 81.22 b.40.6.3,c.37.1.12 93715,93716 1z08A 170 81.39 c.37.1.8 124303 1qorA 327 81.70 b.35.1.2,c.2.1.1 24766,29782 1ek0A 170 82.16 c.37.1.8 32076 1r0wA 286 83.09 c.37.1.12 96754 1vekA 84 83.29 a.5.2.1 113636 2fafA 608 83.85 1u08A 386 83.95 c.67.1.1 107543 2inbA 140 84.82 1e19A 314 85.90 c.73.1.1 34967 1vjfA 180 86.66 d.116.1.1 100809 1io2A 213 87.00 c.55.3.1 62612 1umkA 275 87.23 b.43.4.2,c.25.1.1 113312,113313 2pidA 356 87.45 1bioA 228 87.78 b.47.1.2 26314 1kz8A 337 87.84 e.7.1.1 77633 1t3bA 211 88.63 c.47.1.9,d.17.3.1 106341,106342 2hmvA 144 89.39 c.2.1.9 136615 3bkhA 268 89.71