# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 8.32e-12 2gcxA 75 3.10e-11 1fx7A 230 4.30e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 6.52e-05 2qq9A 226 0.000213 1bi0 226 0.000477 2dtrA 226 0.000857 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.004773 2qu8A 228 0.4584 1bymA 97 0.4791 b.34.1.2 24458 1lnzA 342 0.9456 b.117.1.1,c.37.1.8 78112,78113 2cxxA 190 1.116 c.37.1.8 131013 2e87A 357 1.210 1pujA 282 2.204 c.37.1.8 88294 1udxA 416 2.637 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1pjzA 203 2.849 c.66.1.36 94794 1wf3A 301 4.329 c.37.1.8,d.52.3.1 114574,114575 2gj8A 172 4.993 c.37.1.8 135270 1tq4A 413 5.363 c.37.1.8 107201 1fzqA 181 6.147 c.37.1.8 32060 1sviA 195 6.304 c.37.1.8 106048 2hjgA 436 7.207 1puiA 210 8.440 c.37.1.8 88292 2dbyA 368 9.133 1egaA 301 9.881 c.37.1.8,d.52.3.1 32150,38836 1va0A 239 15.93 c.90.1.1 119899 2nn8A 138 16.47 b.29.1.3 138392 1oixA 191 20.59 c.37.1.8 118710 1h65A 270 21.28 c.37.1.8 65640 1zd9A 188 21.59 c.37.1.8 124938 1jeiA 53 23.05 a.140.1.1 62918 1z06A 189 25.19 c.37.1.8 124301 2qwvA 208 25.84 2bwjA 199 27.10 1u8zA 168 27.39 c.37.1.8 113212 1cj3A 392 29.59 c.3.1.2,d.16.1.2 30347,37878 2v9cA 215 30.08 1nrjB 218 30.12 c.37.1.8 86125 1sltA 134 31.31 b.29.1.3 24186 1h9fA 57 32.27 a.140.1.1 60826 1xtqA 177 32.36 c.37.1.8 122297 3bfkA 181 32.92 2dykA 161 34.24 2h17A 181 37.02 2j0nA 200 38.10 a.250.1.1 137899 2dsjA 423 38.40 2bmeA 186 42.16 c.37.1.8 128790 1tq6A 413 42.79 c.37.1.8 107202 1ukvY 206 44.53 c.37.1.8 107918 1oivA 191 44.79 c.37.1.8 93076 2qi9C 249 44.99 2c81A 418 46.72 2p5sA 199 47.10 2gjsA 176 48.82 c.37.1.8 135287 2ew1A 201 50.89 c.37.1.8 132446 2pzeA 229 51.01 2dpxA 174 53.84 1z3eB 73 53.87 a.60.3.1 124401 1vekA 84 55.22 a.5.2.1 113636 2aznA 219 55.25 c.71.1.2 127608 1x3sA 195 55.59 c.37.1.8 121670 1b9hA 388 58.56 c.67.1.4 34488 1yzgA 179 58.71 c.37.1.8 124276 2ce2X 166 62.10 1ukzA 203 64.43 c.37.1.1 31840 1m2oB 190 65.92 c.37.1.8 78485 2cbzA 237 68.22 1lb2B 84 68.40 a.60.3.1 77871 1z2aA 168 69.92 c.37.1.8 124374 1yzqA 170 70.02 c.37.1.8 124286 1l2tA 235 70.03 c.37.1.12 73514 2g6bA 180 72.69 c.37.1.8 134701 2atvA 196 73.46 c.37.1.8 127308 1ji0A 240 75.75 c.37.1.12 71665 1lbqA 362 76.39 c.92.1.1 77877 1wmsA 177 77.04 c.37.1.8 109414 1f5nA 592 78.26 a.114.1.1,c.37.1.8 19077,32152 1d1gA 168 79.23 c.71.1.1 34889 1uuzA 137 80.74 d.233.1.1 100024 2bcgY 206 81.06 c.37.1.8 128285 1gjjA 168 81.13 a.140.1.1,a.140.1.1 83291,83292 2qf3A 243 82.42