# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.92e-11 2gcxA 75 4.38e-11 1fx7A 230 2.76e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtr 226 0.000148 2qq9A 226 0.000197 1bi0 226 0.000534 2dtrA 226 0.000630 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.002000 2qu8A 228 0.5104 2e87A 357 0.5262 1bymA 97 0.5991 b.34.1.2 24458 1lnzA 342 0.6480 b.117.1.1,c.37.1.8 78112,78113 2cxxA 190 1.264 c.37.1.8 131013 1pujA 282 1.945 c.37.1.8 88294 1udxA 416 2.174 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1wf3A 301 2.837 c.37.1.8,d.52.3.1 114574,114575 1tq4A 413 3.387 c.37.1.8 107201 2dbyA 368 3.422 2gj8A 172 4.125 c.37.1.8 135270 1pjzA 203 4.363 c.66.1.36 94794 1puiA 210 4.397 c.37.1.8 88292 1sviA 195 4.411 c.37.1.8 106048 1egaA 301 4.996 c.37.1.8,d.52.3.1 32150,38836 1fzqA 181 5.417 c.37.1.8 32060 2hjgA 436 8.657 1h65A 270 11.39 c.37.1.8 65640 2dykA 161 14.18 1va0A 239 15.20 c.90.1.1 119899 1h9fA 57 17.11 a.140.1.1 60826 1oixA 191 17.98 c.37.1.8 118710 1nrjB 218 19.83 c.37.1.8 86125 2nn8A 138 20.34 b.29.1.3 138392 1zd9A 188 22.34 c.37.1.8 124938 1xtqA 177 22.50 c.37.1.8 122297 1u8zA 168 23.51 c.37.1.8 113212 2c81A 418 23.60 1vekA 84 24.99 a.5.2.1 113636 1z06A 189 30.20 c.37.1.8 124301 1jeiA 53 32.17 a.140.1.1 62918 2h17A 181 32.76 1gjjA 168 32.91 a.140.1.1,a.140.1.1 83291,83292 2qi9C 249 34.07 2gjsA 176 34.68 c.37.1.8 135287 2pzeA 229 34.91 1ukvY 206 36.18 c.37.1.8 107918 2dpxA 174 36.44 2j0nA 200 37.18 a.250.1.1 137899 1z3eB 73 37.77 a.60.3.1 124401 1y8xB 98 38.04 1l2tA 235 38.25 c.37.1.12 73514 1sltA 134 38.26 b.29.1.3 24186 2p5sA 199 39.58 1b9hA 388 40.79 c.67.1.4 34488 1tq6A 413 41.11 c.37.1.8 107202 3bfkA 181 42.20 1oivA 191 42.45 c.37.1.8 93076 2v9cA 215 43.69 2bmeA 186 45.42 c.37.1.8 128790 1t9hA 307 46.95 b.40.4.5,c.37.1.8 112358,112359 2yv5A 302 47.12 1yzgA 179 49.34 c.37.1.8 124276 3c6cA 316 49.81 2bwjA 199 50.41 1lb2B 84 50.71 a.60.3.1 77871 1x3sA 195 50.86 c.37.1.8 121670 1cj3A 392 51.64 c.3.1.2,d.16.1.2 30347,37878 2ce2X 166 54.81 2b8wA 328 56.42 1oxxK 353 56.82 b.40.6.3,c.37.1.12 93715,93716 1m2oB 190 56.88 c.37.1.8 78485 2g6bA 180 59.07 c.37.1.8 134701 1oxsC 353 60.27 b.40.6.3,c.37.1.12 87519,87520 2qptA 550 61.20 1ji0A 240 61.46 c.37.1.12 71665 2cbzA 237 61.70 1b0uA 262 61.71 c.37.1.12 32370 2atvA 196 62.19 c.37.1.8 127308 3bn1A 373 62.51 1yzqA 170 64.30 c.37.1.8 124286 2hmvA 144 64.36 c.2.1.9 136615 2ew1A 201 64.40 c.37.1.8 132446 1opd 85 65.64 2bbsA 290 66.38 1r0wA 286 66.61 c.37.1.12 96754 2pmkA 243 67.61 2j69A 695 67.81 1z2aA 168 67.96 c.37.1.8 124374 1wmsA 177 68.46 c.37.1.8 109414 2pz0A 252 69.97 1mdoA 393 70.49 c.67.1.4 79013 2bcgY 206 72.28 c.37.1.8 128285 1gutA 68 72.79 b.40.6.1 65576 1tzjA 338 72.79 c.79.1.1 112868 1ltlA 279 73.93 b.40.4.11 84701 2qwvA 208 75.12 1gajA 257 75.49 c.37.1.12 60416 1l7vC 249 77.07 c.37.1.12 73674 1ky3A 182 77.96 c.37.1.8 73193 1ni3A 392 78.10 c.37.1.8,d.15.10.2 80531,80532 1pch 88 79.18 1cexA 214 80.55 c.69.1.30 31285 2qm8A 337 81.53 1jx2B 315 82.22 c.37.1.8 67404 2pcjA 224 83.80 3cxkA 164 84.16 1jb9A 316 85.99 b.43.4.2,c.25.1.1 62840,62841 2f9lA 199 87.06 c.37.1.8 133166 1is3A 135 88.31 b.29.1.3 76773 1gzwA 134 89.23 b.29.1.3 90535