# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.41e-11 2gcxA 75 8.96e-11 2dtr 226 5.85e-05 1fx7A 230 6.49e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 0.000397 2qq9A 226 0.000518 2dtrA 226 0.000903 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.003027 2qu8A 228 0.2320 1lnzA 342 0.4376 b.117.1.1,c.37.1.8 78112,78113 2e87A 357 0.6482 2cxxA 190 0.7094 c.37.1.8 131013 1bymA 97 1.100 b.34.1.2 24458 1pujA 282 1.365 c.37.1.8 88294 1udxA 416 1.576 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1wf3A 301 2.025 c.37.1.8,d.52.3.1 114574,114575 2gj8A 172 2.186 c.37.1.8 135270 2dbyA 368 2.715 1fzqA 181 2.890 c.37.1.8 32060 1puiA 210 3.035 c.37.1.8 88292 1sviA 195 3.434 c.37.1.8 106048 1tq4A 413 3.606 c.37.1.8 107201 1egaA 301 3.865 c.37.1.8,d.52.3.1 32150,38836 2hjgA 436 3.978 1pjzA 203 4.348 c.66.1.36 94794 1oixA 191 8.218 c.37.1.8 118710 1zd9A 188 9.293 c.37.1.8 124938 1h65A 270 9.95 c.37.1.8 65640 1u8zA 168 11.65 c.37.1.8 113212 1z06A 189 11.97 c.37.1.8 124301 1xtqA 177 12.89 c.37.1.8 122297 2qi9C 249 13.82 1nrjB 218 14.49 c.37.1.8 86125 3bfkA 181 14.72 2qwvA 208 15.77 1va0A 239 15.91 c.90.1.1 119899 2pzeA 229 16.83 1ukvY 206 16.92 c.37.1.8 107918 2h17A 181 17.17 2gjsA 176 17.29 c.37.1.8 135287 1oivA 191 18.28 c.37.1.8 93076 2p5sA 199 19.33 2dpxA 174 19.62 2bmeA 186 19.81 c.37.1.8 128790 1x3sA 195 20.39 c.37.1.8 121670 2nn8A 138 20.40 b.29.1.3 138392 2ew1A 201 21.38 c.37.1.8 132446 1jeiA 53 21.72 a.140.1.1 62918 1yzgA 179 21.74 c.37.1.8 124276 1l2tA 235 22.14 c.37.1.12 73514 2g6bA 180 24.13 c.37.1.8 134701 2cbzA 237 24.46 1b0uA 262 25.09 c.37.1.12 32370 2dykA 161 25.40 2ce2X 166 26.32 1ji0A 240 26.41 c.37.1.12 71665 1tq6A 413 27.06 c.37.1.8 107202 1wmsA 177 27.22 c.37.1.8 109414 1yzqA 170 27.56 c.37.1.8 124286 1t9hA 307 27.60 b.40.4.5,c.37.1.8 112358,112359 1sgwA 214 28.71 c.37.1.12 105541 1m2oB 190 28.88 c.37.1.8 78485 2bbsA 290 30.16 2bcgY 206 30.55 c.37.1.8 128285 2ff7A 247 31.60 c.37.1.12 133377 1z2aA 168 33.01 c.37.1.8 124374 2pcjA 224 33.37 1ni3A 392 33.81 c.37.1.8,d.15.10.2 80531,80532 1r0wA 286 35.08 c.37.1.12 96754 1h9fA 57 35.32 a.140.1.1 60826 2f9lA 199 35.70 c.37.1.8 133166 2pmkA 243 36.24 2atvA 196 36.51 c.37.1.8 127308 1sltA 134 36.78 b.29.1.3 24186 1jj7A 260 36.93 c.37.1.12 63114 2yv5A 302 37.47 1z0jA 170 38.13 c.37.1.8 124319 2bwjA 199 39.75 1x1rA 178 40.95 c.37.1.8 121595 1ky3A 182 41.49 c.37.1.8 73193 1gajA 257 41.52 c.37.1.12 60416 2b8wA 328 41.90 2c81A 418 42.02 1r2qA 170 43.71 c.37.1.8 96874 1cj3A 392 44.40 c.3.1.2,d.16.1.2 30347,37878 2a9kA 187 44.76 c.37.1.8 126442 1ek0A 170 45.89 c.37.1.8 32076 1zj6A 187 47.37 c.37.1.8 125145 1g6hA 257 47.45 c.37.1.12 60318 1y8xB 98 48.43 1z08A 170 48.67 c.37.1.8 124303 1vplA 256 49.87 c.37.1.12 113966 1l7vC 249 49.97 c.37.1.12 73674 2ffqA 171 51.41 2j0nA 200 52.06 a.250.1.1 137899 1ctqA 166 52.42 c.37.1.8 31965 2d2eA 250 52.77 1uptA 171 53.01 c.37.1.8 99767 1g291 372 53.06 1ukzA 203 54.02 c.37.1.1 31840 1b9hA 388 55.22 c.67.1.4 34488 2ixeA 271 55.87 1xmiA 291 55.91 c.37.1.12 115489 1oxsC 353 56.09 b.40.6.3,c.37.1.12 87519,87520 1oxxK 353 60.33 b.40.6.3,c.37.1.12 93715,93716 1z3eB 73 62.54 a.60.3.1 124401 1gjjA 168 63.50 a.140.1.1,a.140.1.1 83291,83292 2auwA 170 64.49 a.35.1.10,d.331.1.1 127339,127340 1kshA 186 64.78 c.37.1.8 72914 2v9cA 215 64.86 1is3A 135 65.55 b.29.1.3 76773 2qm8A 337 68.26 2a5jA 191 71.38 c.37.1.8 126175 1e0cA 271 73.78 c.46.1.2,c.46.1.2 32717,32718 2it1A 362 73.81 2inbA 140 76.81 1opd 85 77.47 2j69A 695 77.67 1vekA 84 77.81 a.5.2.1 113636 1qg4A 216 77.91 c.37.1.8 32035 1kaoA 167 78.06 c.37.1.8 32014 1vg8A 207 79.44 c.37.1.8 108606 2pz0A 252 80.19 3c6cA 316 83.18 1nkrA 201 83.58 b.1.1.4,b.1.1.4 21799,21800 1lb2B 84 84.47 a.60.3.1 77871 1jx2B 315 85.15 c.37.1.8 67404 3bn1A 373 85.36 3cxkA 164 85.57 1f5nA 592 85.85 a.114.1.1,c.37.1.8 19077,32152 2qptA 550 87.88