# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 9.76e-13 2gcxA 75 2.60e-12 2dtr 226 1.69e-05 1bi0 226 6.46e-05 1fx7A 230 0.000115 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2dtrA 226 0.000312 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.000351 1qw1A 121 0.001750 1pujA 282 0.3685 c.37.1.8 88294 3cxkA 164 0.9614 1fzqA 181 1.009 c.37.1.8 32060 1udxA 416 1.363 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1puiA 210 1.668 c.37.1.8 88292 1tq4A 413 1.998 c.37.1.8 107201 2qu8A 228 2.111 1pjzA 203 2.557 c.66.1.36 94794 1sviA 195 2.682 c.37.1.8 106048 2e87A 357 2.838 1bymA 97 2.939 b.34.1.2 24458 2dbyA 368 2.975 1wf3A 301 3.393 c.37.1.8,d.52.3.1 114574,114575 2hjgA 436 4.741 1oixA 191 4.917 c.37.1.8 118710 1tq6A 413 5.511 c.37.1.8 107202 2cxxA 190 5.994 c.37.1.8 131013 2gj8A 172 6.268 c.37.1.8 135270 1lnzA 342 6.939 b.117.1.1,c.37.1.8 78112,78113 3bfkA 181 8.482 2v9cA 215 9.445 1zd9A 188 9.708 c.37.1.8 124938 1oivA 191 10.62 c.37.1.8 93076 1ni3A 392 10.79 c.37.1.8,d.15.10.2 80531,80532 2dykA 161 13.04 1jalA 363 13.08 c.37.1.8,d.15.10.2 84138,84139 1mkyA 439 13.15 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2dpxA 174 14.41 1u8zA 168 15.19 c.37.1.8 113212 2auwA 170 15.43 a.35.1.10,d.331.1.1 127339,127340 1yzgA 179 16.72 c.37.1.8 124276 2gjsA 176 17.99 c.37.1.8 135287 1z06A 189 18.64 c.37.1.8 124301 1ezvD 245 19.44 a.3.1.3,f.23.11.1 59546,59547 1xtqA 177 19.49 c.37.1.8 122297 2dvzA 314 19.75 2dc4A 165 20.69 1egaA 301 21.15 c.37.1.8,d.52.3.1 32150,38836 1dkqA 410 22.98 c.60.1.2 33998 1wmsA 177 23.40 c.37.1.8 109414 2h17A 181 27.45 1nrjB 218 27.66 c.37.1.8 86125 1h65A 270 27.69 c.37.1.8 65640 1l2tA 235 27.90 c.37.1.12 73514 1va0A 239 29.16 c.90.1.1 119899 2p5sA 199 29.62 1zj6A 187 29.93 c.37.1.8 125145 2g6bA 180 30.34 c.37.1.8 134701 1qg4A 216 30.58 c.37.1.8 32035 1kb9D 246 30.77 a.3.1.3,f.23.11.1 77317,77318 2bmeA 186 30.82 c.37.1.8 128790 1sltA 134 31.44 b.29.1.3 24186 1sgwA 214 32.34 c.37.1.12 105541 1x1rA 178 34.98 c.37.1.8 121595 2atvA 196 38.03 c.37.1.8 127308 2cbzA 237 38.05 1uuzA 137 40.51 d.233.1.1 100024 2qpqA 301 41.55 1t3bA 211 42.12 c.47.1.9,d.17.3.1 106341,106342 2ew1A 201 42.69 c.37.1.8 132446 1sqhA 312 42.88 d.108.1.5 98966 1x3sA 195 44.10 c.37.1.8 121670 2qi9C 249 46.59 2qjoA 341 47.44 1noaA 113 48.74 b.1.7.1 22208 1bccD 241 50.69 a.3.1.3,f.23.11.1 15959,43698 2r6fA 972 53.46 1uptA 171 54.95 c.37.1.8 99767 1ky3A 182 56.14 c.37.1.8 73193 1wggA 96 57.94 d.15.1.1 114612 1ppjD 241 58.12 a.3.1.3,f.23.11.1 104258,104259 2db1A 118 60.54 2ff7A 247 60.65 c.37.1.12 133377 2dt5A 211 60.95 a.4.5.38,c.2.1.12 131708,131709 2pzeA 229 62.37 2pz0A 252 67.48 1jb9A 316 71.66 b.43.4.2,c.25.1.1 62840,62841 2mcmA 112 72.82 b.1.7.1 22207 2a5jA 191 74.22 c.37.1.8 126175 1ezoA 370 75.88 c.94.1.1 59539 2pcjA 224 76.84 1r5tA 142 77.33 c.97.1.1 104812 2j0nA 200 79.38 a.250.1.1 137899 1r2qA 170 80.13 c.37.1.8 96874 1e7kA 128 80.35 d.79.3.1 39813 2ce2X 166 81.23 1z0jA 170 81.34 c.37.1.8 124319 1w41A 101 83.01 1e4fT 419 84.13 c.55.1.1,c.55.1.1 33453,33454 1h7mA 102 84.71 d.79.3.1 83485