# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 2.23e-08 2gcxA 75 4.06e-08 2dtr 226 0.000950 1fx7A 230 0.002589 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 0.005212 2dtrA 226 0.01103 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2qq9A 226 0.02718 1qw1A 121 0.03745 1bymA 97 2.613 b.34.1.2 24458 1pujA 282 2.783 c.37.1.8 88294 1pjzA 203 3.667 c.66.1.36 94794 2e87A 357 4.078 2qu8A 228 6.126 1fzqA 181 8.424 c.37.1.8 32060 1tq4A 413 9.466 c.37.1.8 107201 2gj8A 172 10.54 c.37.1.8 135270 1udxA 416 13.58 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2p10A 286 14.73 2qwvA 208 21.45 1oixA 191 22.54 c.37.1.8 118710 1xtqA 177 23.46 c.37.1.8 122297 1va0A 239 25.30 c.90.1.1 119899 1sviA 195 26.58 c.37.1.8 106048 2hjgA 436 27.53 2cxxA 190 28.40 c.37.1.8 131013 1puiA 210 28.49 c.37.1.8 88292 3cxkA 164 29.88 1wf3A 301 30.30 c.37.1.8,d.52.3.1 114574,114575 1sltA 134 36.71 b.29.1.3 24186 1z06A 189 37.54 c.37.1.8 124301 2dykA 161 40.26 1h65A 270 42.59 c.37.1.8 65640 1u8zA 168 45.71 c.37.1.8 113212 2dbyA 368 46.90 1ltlA 279 47.52 b.40.4.11 84701 1oivA 191 49.23 c.37.1.8 93076 1zd9A 188 51.40 c.37.1.8 124938 2bmeA 186 52.70 c.37.1.8 128790 1tq6A 413 53.72 c.37.1.8 107202 1jeiA 53 58.05 a.140.1.1 62918 3bfkA 181 59.06 1wmsA 177 59.80 c.37.1.8 109414 1lnzA 342 60.21 b.117.1.1,c.37.1.8 78112,78113 2o9cA 342 62.81 2p5sA 199 64.11 1zhaA 267 64.32 3bg2A 444 65.26 1x3sA 195 67.18 c.37.1.8 121670 1h9fA 57 69.67 a.140.1.1 60826 2bwjA 199 70.66 1e0cA 271 72.46 c.46.1.2,c.46.1.2 32717,32718 2h17A 181 72.57 1jb9A 316 72.68 b.43.4.2,c.25.1.1 62840,62841 1is3A 135 72.71 b.29.1.3 76773 1egaA 301 73.04 c.37.1.8,d.52.3.1 32150,38836 1w34A 304 74.31 b.43.4.2,c.25.1.1 120620,120621 2ew1A 201 74.38 c.37.1.8 132446 2atvA 196 74.47 c.37.1.8 127308 1ve3A 227 75.50 c.66.1.43 120010 1y8xB 98 76.89 1m2oB 190 77.21 c.37.1.8 78485 2j0nA 200 77.38 a.250.1.1 137899 2f9lA 199 77.63 c.37.1.8 133166 1z0jA 170 78.24 c.37.1.8 124319 1yzgA 179 79.62 c.37.1.8 124276 2j89A 261 81.19 1z2aA 168 81.72 c.37.1.8 124374 1r2qA 170 82.43 c.37.1.8 96874 2qptA 550 82.87 1yzqA 170 83.88 c.37.1.8 124286 1x1rA 178 84.13 c.37.1.8 121595 1ukzA 203 84.16 c.37.1.1 31840 2h57A 190 85.06 2as0A 396 85.28 b.122.1.9,c.66.1.51 127227,127228 1xwiA 322 86.06