# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.80e-05 2gcxA 75 2.29e-05 1fx7A 230 0.006795 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1bi0 226 0.1323 1noaA 113 1.487 b.1.7.1 22208 1j48A 110 3.605 b.1.7.1 84112 1bymA 97 3.957 b.34.1.2 24458 1fdr 248 5.868 2mcmA 112 6.263 b.1.7.1 22207 1fdrA 248 9.696 b.43.4.2,c.25.1.1 25653,31543 1iz6A 138 10.50 b.34.5.2,b.40.4.5 76976,76977 2mcm 112 11.90 2oggA 152 12.50 2glwA 92 12.91 2oq0A 206 13.46 1ybyA 215 14.24 2ckkA 127 15.79 1xdnA 277 16.13 d.142.2.4 115168 1eejA 216 16.28 c.47.1.9,d.17.3.1 33057,38071 3c0cA 73 16.28 1cbfA 285 16.56 c.90.1.1 35587 1tuc 63 18.78 3cnvA 162 20.45 1qw1A 121 21.37 1h9mA 145 21.81 b.40.6.2,b.40.6.2 60833,60834 1bkbA 136 22.48 b.34.5.2,b.40.4.5 24609,25341 2audA 257 22.85 2b2nA 344 25.60 c.37.1.19 127710 1qcsA 211 26.44 b.52.2.3,d.31.1.1 26927,38461 1aboA 62 26.68 b.34.2.1 24474 1e0cA 271 26.97 c.46.1.2,c.46.1.2 32717,32718 2pa1A 87 29.26 1uarA 285 31.09 c.46.1.2,c.46.1.2 107762,107763 1rqpA 299 31.39 b.141.1.1,c.132.1.1 97754,97755 1uadC 99 31.44 b.1.18.18 88379 2ikkA 173 33.35 2g6fX 59 37.42 2eveA 157 37.64 b.122.1.8 132427 2dtr 226 37.79 1nxzA 246 40.59 b.122.1.2,c.116.1.5 86391,86392 1va0A 239 41.41 c.90.1.1 119899 1dj7B 75 41.72 b.34.4.3 24598 2elfA 370 42.79 1lckA 175 42.86 b.34.2.1,d.93.1.1 24552,40421 1bkb 136 42.97 1kcvH 217 44.79 b.1.1.1,b.1.1.2 72315,72316 1umkA 275 45.04 b.43.4.2,c.25.1.1 113312,113313 2qt5A 200 46.79 2ooiA 162 47.54 2egvA 229 49.46 2pkhA 148 49.74 1at0 145 51.03 1z85A 234 51.05 1qa7A 217 51.52 b.47.1.4 26425 1hk6A 95 54.14 b.1.18.18 83539 1orvA 728 58.81 b.70.3.1,c.69.1.24 87354,87355 1vkiA 181 59.52 d.116.1.1 108664 1xexB 172 60.06 2j6fA 62 60.20 3grsA 478 61.70 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1v7lA 163 61.75 c.8.2.1 113562 1rhsA 296 61.97 c.46.1.2,c.46.1.2 32703,32704 2a08A 60 62.21 1vdwA 254 64.29 e.7.1.1 100569 1dtoA 221 67.08 b.91.1.1 28405 1zx6A 58 67.56 2r6vA 191 69.68 3cp0A 82 70.17 1wosA 364 71.01 b.44.2.1,d.250.1.1 109468,109469 1ep2B 261 71.05 b.43.4.2,c.25.1.3 25666,31556 1zlmA 58 74.05 3sxlA 184 76.12 d.58.7.1,d.58.7.1 39173,39174 1w70A 60 76.33 2crvA 120 76.78 1nkrA 201 76.89 b.1.1.4,b.1.1.4 21799,21800 4aahA 571 77.23 b.70.1.1 27678 2ak5A 64 77.28 1c0aA 585 77.81 b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 1kzlA 208 77.88 b.43.4.3,b.43.4.3 77635,77636 2ho9A 167 78.83 2d1xA 66 79.22 1gcqA 61 79.59 b.34.2.1 60434 3vubA 101 80.84 b.34.6.1 24613 1suuA 312 82.81 b.68.10.1 99006 1ep3B 262 82.87 b.43.4.2,c.25.1.3 25664,31554 1js8A 394 82.89 a.86.1.1,b.112.1.1 67219,67220 1zc1A 208 82.96 1at0A 145 83.01 b.86.1.1 28374 1t3bA 211 83.59 c.47.1.9,d.17.3.1 106341,106342 1oebA 62 84.01 b.34.2.1 86909 1smxA 96 85.20 b.40.4.5 105772 1cr5A 189 86.23 b.52.2.3,d.31.1.1 26931,38465 1pjqA 457 86.41 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2uzcA 88 86.89 1si2A 149 88.40 b.34.14.1 105569 2fcfA 103 88.79 b.36.1.1 133267 1semA 58 89.17 b.34.2.1 24544