Best Alignments for T0462

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2h3jA	9.3868e-12	2h3jA/T0462-2h3jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gcxA	2.1325e-11	2gcxA/T0462-2gcxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dtrA	1.0169e-04	2dtrA/T0462-2dtrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.24 a.76.1.1 b.34.1.2
1qw1A	1.1372e-04	1qw1A/T0462-1qw1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fx7A	6.2601e-04	1fx7A/T0462-1fx7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.24 a.76.1.1 b.34.1.2
2qq9A	5.1232e-03	2qq9A/T0462-2qq9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dbyA	9.9232e-01	2dbyA/T0462-2dbyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2e87A	1.3669e+00	2e87A/T0462-2e87A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ni3A	1.4842e+00	1ni3A/T0462-1ni3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8 d.15.10.2
1pujA	2.9375e+00	1pujA/T0462-1pujA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8
1udxA	5.2059e+00	1udxA/T0462-1udxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.117.1.1 c.37.1.8 d.242.1.1
2hjgA	6.1257e+00	2hjgA/T0462-2hjgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rhsA	9.1086e+00	1rhsA/T0462-1rhsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.46.1.2 c.46.1.2
1jalA	1.0114e+01	1jalA/T0462-1jalA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8 d.15.10.2
2b8wA	1.0373e+01	2b8wA/T0462-2b8wA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2a5jA	1.0491e+01	2a5jA/T0462-2a5jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8
1rhs	1.0582e+01	1rhs/T0462-1rhs-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1mkyA	1.1226e+01	1mkyA/T0462-1mkyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8 c.37.1.8 d.52.5.1
2yv5A	1.1515e+01	2yv5A/T0462-2yv5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1h65A	1.2552e+01	1h65A/T0462-1h65A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.8

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001