# List of top-scoring protein chains for T0462.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	1.76e-06		
2gcxA	75	8.53e-06		
1fx7A	230	0.2234	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2dykA	161	16.85		
2ev1A	222	21.12		
1j6oA	268	24.81	c.1.9.12	77088
1y8xB	98	39.59		
2ekkA	47	41.19		
2r5jA	423	43.70		
1qvpA	87	46.91	b.34.1.2	111659
1bymA	97	49.08	b.34.1.2	24458
1qw1A	121	52.23		
2hjgA	436	52.89		
1e0cA	271	53.75	c.46.1.2,c.46.1.2	32717,32718
1nb5I	98	56.59	d.17.1.2	80381
1gd4A	98	57.94	d.17.1.2	60438
1cyuA	98	58.95	d.17.1.2	38004
1y10A	407	60.86		
2inbA	140	61.32		
2ogeA	399	62.45		
1g3tA	226	63.39	a.4.5.24,a.76.1.1,b.34.1.2	65127,65128,65129
2qq9A	226	64.39		
2qqaA	226	64.61		
2qqbA	226	64.82		
2tdxA	226	64.82	a.4.5.24,a.76.1.1	16201,18407
1fwzA	226	64.82	a.4.5.24,a.76.1.1,b.34.1.2	60077,60078,60079
1p92A	226	65.70	a.4.5.24,a.76.1.1,b.34.1.2	104085,104086,104087
1g3yA	226	65.85	a.4.5.24,a.76.1.1,b.34.1.2	65136,65137,65138
1c0wA	225	66.06	a.4.5.24,a.76.1.1,b.34.1.2	16211,18417,24455
2dtrA	226	66.15	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2uzpA	144	68.04		
2oo8X	317	87.75		
2okfA	140	88.31		
2z83A	459	89.02		
1fvrA	327	89.53	d.144.1.7	60047