# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 9.43e-12 2gcxA 75 2.81e-11 2dtrA 226 2.00e-05 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1qw1A 121 0.000115 1fx7A 230 0.000157 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2qq9A 226 0.001130 1rhsA 296 5.769 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 6.351 2dbyA 368 6.387 2egxA 269 8.332 1j48A 110 8.982 b.1.7.1 84112 1ni3A 392 9.313 c.37.1.8,d.15.10.2 80531,80532 2e87A 357 10.10 2aotA 292 10.76 c.66.1.19 127098 2dejA 350 11.14 1pujA 282 12.58 c.37.1.8 88294 2ogeA 399 12.83 1ri5A 298 13.84 c.66.1.34 97502 2fa1A 160 14.63 d.190.1.2 133182 1vekA 84 16.43 a.5.2.1 113636 2ixeA 271 21.08 2hjgA 436 21.89 2fjtA 182 24.23 1fqtA 112 25.43 b.33.1.1 24441 1gsjA 258 26.50 c.73.1.2 70397 2aouA 292 27.04 c.66.1.19 127100 2p19A 149 27.23 2ff7A 247 27.51 c.37.1.12 133377 2a5jA 191 28.18 c.37.1.8 126175 2oggA 152 28.20 2ikkA 173 31.07 1l2tA 235 31.25 c.37.1.12 73514 2v3mA 131 31.70 1x3sA 195 32.39 c.37.1.8 121670 1udxA 416 32.69 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1nrjB 218 33.13 c.37.1.8 86125 1y8xB 98 33.39 1z02A 446 33.44 1f5nA 592 34.11 a.114.1.1,c.37.1.8 19077,32152 1o69A 394 34.60 c.67.1.4 92560 2yv5A 302 34.83 1nf2A 268 37.53 c.108.1.10 91849 2cbzA 237 37.65 2nq2C 253 37.94 1z47A 355 37.95 1k47A 337 38.23 d.14.1.5,d.58.26.4 72040,72041 3cnvA 162 38.69 2bcgY 206 39.31 c.37.1.8 128285 1h65A 270 40.86 c.37.1.8 65640 1wmsA 177 41.24 c.37.1.8 109414 2c81A 418 41.42 2bl9A 238 43.26 1qg4A 216 43.42 c.37.1.8 32035 2pcjA 224 43.98 1yzqA 170 44.37 c.37.1.8 124286 1uarA 285 44.83 c.46.1.2,c.46.1.2 107762,107763 2qwvA 208 45.30 1b0uA 262 45.73 c.37.1.12 32370 2ev1A 222 45.74 1h75A 81 47.54 c.47.1.1 60716 2gf9A 189 47.58 2gj8A 172 49.16 c.37.1.8 135270 1i8dA 213 49.35 b.43.4.3,b.43.4.3 61953,61954 2bbsA 290 50.18 2ffqA 171 50.33 1jalA 363 50.35 c.37.1.8,d.15.10.2 84138,84139 2pmkA 243 50.92 2cz9A 350 50.97 1kvkA 395 51.03 d.14.1.5,d.58.26.3 73060,73061 1ee4A 423 51.52 a.118.1.1 19128 2f9lA 199 51.99 c.37.1.8 133166 2acaA 189 52.18 d.63.1.2 126545 1z2aA 168 52.61 c.37.1.8 124374 2g6bA 180 52.89 c.37.1.8 134701 1z3eB 73 53.05 a.60.3.1 124401 2ccqA 99 53.99 d.314.1.1 130252 2ooiA 162 54.21 2it1A 362 54.47 2fh5B 214 54.86 c.37.1.8 133478 2g29A 417 55.17 2ew1A 201 56.23 c.37.1.8 132446 1x1rA 178 57.34 c.37.1.8 121595 2bb3A 221 57.37 c.90.1.1 128257 1nrwA 288 58.17 c.108.1.10 86128 1ji0A 240 59.37 c.37.1.12 71665 1cbfA 285 60.03 c.90.1.1 35587 2ftxB 64 61.36 d.300.1.2 134086 1g6hA 257 62.33 c.37.1.12 60318 2a5dA 175 62.60 c.37.1.8 126172 2d2eA 250 64.33 1ufwA 95 64.73 d.58.7.1 99358 1z08A 170 65.92 c.37.1.8 124303 2d1hA 109 66.44 a.4.5.50 131125 1e0cA 271 67.32 c.46.1.2,c.46.1.2 32717,32718 2j85A 122 67.96 d.321.1.1 138133 1b00A 127 68.08 c.23.1.1 31122 2zgwA 235 70.02 2qptA 550 70.25 1kmqA 184 70.55 c.37.1.8 84412 1t9hA 307 70.70 b.40.4.5,c.37.1.8 112358,112359 3ch0A 272 70.71 1z0jA 170 70.94 c.37.1.8 124319 1ve2A 235 72.06 c.90.1.1 120008 1vg8A 207 72.16 c.37.1.8 108606 1g8kB 133 72.24 b.33.1.1 24435 2h57A 190 72.80 1mr3F 181 72.82 c.37.1.8 79422 1oxxK 353 72.99 b.40.6.3,c.37.1.12 93715,93716 2bmeA 186 73.88 c.37.1.8 128790 2oogA 287 75.09 2fziA 206 75.17 c.71.1.1 134448 2gkgA 127 75.50 2pi1A 334 75.75 2jbaA 127 76.07 3bn1A 373 77.46 3bwgA 239 78.29 1rwzA 245 78.37 d.131.1.2,d.131.1.2 98005,98006 3c0dA 119 78.48 1r2qA 170 78.81 c.37.1.8 96874 1g291 372 79.46 1l3iA 192 80.42 c.66.1.22 77676 1rfsA 139 80.65 b.33.1.1 24434 1zccA 248 81.35 c.1.18.3 124903 2eenA 183 85.16 1kpgA 287 85.83 c.66.1.18 68735 2py6A 409 86.40 2gxqA 207 86.96 2yvqA 143 87.79 1wf3A 301 89.00 c.37.1.8,d.52.3.1 114574,114575 1ek0A 170 89.07 c.37.1.8 32076 1qp8A 303 89.78 c.2.1.4,c.23.12.1 30092,31352