# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 9.63e-13 2gcxA 75 3.77e-12 2dtrA 226 4.57e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 3.15e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 7.69e-05 2qq9A 226 0.000836 1rhsA 296 2.967 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 3.061 1j48A 110 3.965 b.1.7.1 84112 2aotA 292 7.942 c.66.1.19 127098 2e87A 357 8.021 1uarA 285 11.51 c.46.1.2,c.46.1.2 107762,107763 1fqtA 112 12.59 b.33.1.1 24441 2dbyA 368 12.60 2py6A 409 13.64 1ni3A 392 14.62 c.37.1.8,d.15.10.2 80531,80532 2dejA 350 15.02 2egxA 269 15.31 1ri5A 298 16.38 c.66.1.34 97502 1vekA 84 16.43 a.5.2.1 113636 1z02A 446 17.71 2fa1A 160 17.86 d.190.1.2 133182 1y8xB 98 20.52 1o6aA 96 21.76 b.139.1.1 92562 2hjgA 436 22.85 1h75A 81 23.83 c.47.1.1 60716 1i8dA 213 25.13 b.43.4.3,b.43.4.3 61953,61954 2oggA 152 25.97 2v3mA 131 26.35 2p19A 149 27.47 2aouA 292 29.05 c.66.1.19 127100 1e0cA 271 29.72 c.46.1.2,c.46.1.2 32717,32718 1rwzA 245 29.78 d.131.1.2,d.131.1.2 98005,98006 1gsjA 258 30.02 c.73.1.2 70397 1udxA 416 30.49 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2fjtA 182 30.94 2ikkA 173 32.47 2ogeA 399 32.76 1pujA 282 32.87 c.37.1.8 88294 1kvkA 395 34.18 d.14.1.5,d.58.26.3 73060,73061 2ooiA 162 34.47 1ufwA 95 35.64 d.58.7.1 99358 2gkgA 127 35.72 2g29A 417 36.78 2de0X 526 38.87 2ev1A 222 40.04 1zccA 248 40.04 c.1.18.3 124903 1g8kB 133 43.25 b.33.1.1 24435 3cnvA 162 43.43 3bn1A 373 45.98 2bl9A 238 46.05 2nq2C 253 47.12 2ff7A 247 47.34 c.37.1.12 133377 1l2tA 235 48.24 c.37.1.12 73514 1b00A 127 50.59 c.23.1.1 31122 1nrjB 218 51.29 c.37.1.8 86125 1cbfA 285 52.73 c.90.1.1 35587 1yt8A 539 53.49 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2j6iA 364 53.88 1o69A 394 54.23 c.67.1.4 92560 2ixeA 271 54.23 2jbaA 127 54.31 3c0dA 119 54.33 1vd6A 224 54.76 c.1.18.3 119991 2qwvA 208 54.95 1ee4A 423 55.10 a.118.1.1 19128 1nf2A 268 55.29 c.108.1.10 91849 2yv5A 302 60.91 1jalA 363 60.92 c.37.1.8,d.15.10.2 84138,84139 1z3eB 73 61.17 a.60.3.1 124401 2c81A 418 61.57 2dekA 265 62.09 c.90.1.1 131430 2cbzA 237 63.62 2fziA 206 63.82 c.71.1.1 134448 2zgwA 235 64.70 1ve2A 235 65.96 c.90.1.1 120008 1f5nA 592 66.98 a.114.1.1,c.37.1.8 19077,32152 1qg4A 216 67.61 c.37.1.8 32035 2yvqA 143 68.50 1k47A 337 68.72 d.14.1.5,d.58.26.4 72040,72041 2pkhA 148 70.09 2cukA 311 70.14 2o55A 258 70.40 1gdhA 320 70.68 c.2.1.4,c.23.12.1 30095,31355 2if1A 126 71.48 d.64.1.1 39547 1vg5A 73 72.26 a.5.2.1 113640 2fssA 365 72.50 1yzqA 170 72.89 c.37.1.8 124286 2acaA 189 73.77 d.63.1.2 126545 2a5jA 191 75.39 c.37.1.8 126175 2bcgY 206 77.10 c.37.1.8 128285 1wwkA 307 78.44 2bbsA 290 79.06 1va0A 239 79.48 c.90.1.1 119899 1kzlA 208 80.37 b.43.4.3,b.43.4.3 77635,77636 2cz9A 350 80.40 2octA 98 80.66 1opdA 85 80.95 d.94.1.1 40560 2imqX 282 81.70 2qm8A 337 81.96 1nrwA 288 82.01 c.108.1.10 86128 2bb3A 221 82.76 c.90.1.1 128257 3cjpA 272 82.87 2oap1 511 83.51 1q0uA 219 83.68 c.37.1.19 95512 2z6rA 265 83.77 2e4qA 109 84.29 1zc1A 208 84.61 2dbqA 334 84.89 1z6nA 167 85.65 c.47.1.1 124530 1wmsA 177 86.24 c.37.1.8 109414 1kpgA 287 89.67 c.66.1.18 68735