# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 4.18e-12 2gcxA 75 1.68e-11 2dtrA 226 9.30e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 0.000151 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.000165 2qq9A 226 0.000718 2aotA 292 3.784 c.66.1.19 127098 2ogeA 399 4.003 2e87A 357 4.085 1ri5A 298 4.834 c.66.1.34 97502 1ni3A 392 5.229 c.37.1.8,d.15.10.2 80531,80532 1rhsA 296 6.331 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 6.646 2aouA 292 7.895 c.66.1.19 127100 2gkgA 127 9.019 2dejA 350 9.142 2dbyA 368 9.618 1fqtA 112 12.19 b.33.1.1 24441 1o69A 394 12.44 c.67.1.4 92560 1nf2A 268 12.80 c.108.1.10 91849 2jbaA 127 13.22 1j48A 110 13.61 b.1.7.1 84112 2c81A 418 13.68 1pujA 282 15.21 c.37.1.8 88294 1b00A 127 15.55 c.23.1.1 31122 2a5jA 191 19.64 c.37.1.8 126175 1k47A 337 21.27 d.14.1.5,d.58.26.4 72040,72041 2hjgA 436 21.63 1nrwA 288 23.18 c.108.1.10 86128 1nrjB 218 24.15 c.37.1.8 86125 1z02A 446 24.91 2bcgY 206 25.20 c.37.1.8 128285 2v3mA 131 25.88 1udxA 416 27.10 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2egxA 269 27.70 2bl9A 238 27.84 2fjtA 182 28.27 1vekA 84 28.89 a.5.2.1 113636 1x3sA 195 31.24 c.37.1.8 121670 2cxxA 190 31.84 c.37.1.8 131013 3bn1A 373 31.91 1q0uA 219 32.34 c.37.1.19 95512 1wmsA 177 34.05 c.37.1.8 109414 2cz9A 350 34.26 1l2tA 235 35.36 c.37.1.12 73514 1h75A 81 36.50 c.47.1.1 60716 2j6iA 364 37.09 2ew1A 201 38.15 c.37.1.8 132446 1h65A 270 39.27 c.37.1.8 65640 1f5nA 592 40.06 a.114.1.1,c.37.1.8 19077,32152 1g8kB 133 40.49 b.33.1.1 24435 2f9lA 199 41.37 c.37.1.8 133166 2gf9A 189 41.42 2ff7A 247 41.86 c.37.1.12 133377 1uarA 285 41.89 c.46.1.2,c.46.1.2 107762,107763 1z3eB 73 41.97 a.60.3.1 124401 2fh5B 214 42.62 c.37.1.8 133478 1rwzA 245 43.08 d.131.1.2,d.131.1.2 98005,98006 2qm8A 337 43.93 1kvkA 395 44.00 d.14.1.5,d.58.26.3 73060,73061 1yzqA 170 45.25 c.37.1.8 124286 2fa1A 160 45.52 d.190.1.2 133182 2g29A 417 46.64 2fziA 206 46.76 c.71.1.1 134448 1z2aA 168 47.08 c.37.1.8 124374 1y8xB 98 49.73 1wwkA 307 50.72 2gxqA 207 51.28 2bmjA 178 53.93 c.37.1.8 128797 1ufwA 95 54.31 d.58.7.1 99358 2g6bA 180 54.60 c.37.1.8 134701 2ffqA 171 55.21 1z0jA 170 55.24 c.37.1.8 124319 1e0cA 271 57.35 c.46.1.2,c.46.1.2 32717,32718 1eluA 390 57.66 c.67.1.3 34434 2ixeA 271 59.08 1t9hA 307 59.47 b.40.4.5,c.37.1.8 112358,112359 2fssA 365 59.70 2bmeA 186 60.34 c.37.1.8 128790 1dxyA 333 60.49 c.2.1.4,c.23.12.1 30094,31354 2iwrA 178 61.13 2h57A 190 61.27 2acaA 189 61.29 d.63.1.2 126545 2pi1A 334 61.78 2gj8A 172 62.13 c.37.1.8 135270 1ek0A 170 63.10 c.37.1.8 32076 1mkyA 439 64.55 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1z08A 170 64.85 c.37.1.8 124303 1vg8A 207 65.36 c.37.1.8 108606 1qp8A 303 66.47 c.2.1.4,c.23.12.1 30092,31352 1b0uA 262 66.76 c.37.1.12 32370 1z47A 355 66.81 2ev1A 222 66.92 2oggA 152 67.11 2gk6A 624 67.30 1g6hA 257 67.39 c.37.1.12 60318 2a5dA 175 67.61 c.37.1.8 126172 1dxy 333 67.64 1r2qA 170 67.73 c.37.1.8 96874 2d1hA 109 67.98 a.4.5.50 131125 1kpgA 287 69.23 c.66.1.18 68735 1xdwA 331 69.35 1ee4A 423 71.19 a.118.1.1 19128 1jalA 363 71.41 c.37.1.8,d.15.10.2 84138,84139 2p19A 149 71.86 1kmvA 186 72.38 c.71.1.1 72757 2pcjA 224 73.17 2cbzA 237 73.63 1wg8A 285 73.69 a.60.13.1,c.66.1.23 114605,114606 3c0dA 119 74.29 2qu8A 228 74.71 2okfA 140 74.82 1ji0A 240 75.39 c.37.1.12 71665 2qwvA 208 75.99 1im8A 244 76.02 c.66.1.14 66212 1vicA 262 76.20 c.68.1.13 100756 2j0vA 212 76.52 2d2eA 250 76.68 2ffjA 300 76.68 e.50.1.1 133387 2zbvA 263 78.43 2de0X 526 78.58 1qg4A 216 78.79 c.37.1.8 32035 1x1rA 178 79.16 c.37.1.8 121595 2yv5A 302 80.23 2uxwA 607 82.92 3b5vA 248 83.26 2bbsA 290 83.78 1gdhA 320 84.33 c.2.1.4,c.23.12.1 30095,31355 2h17A 181 85.16 2b8wA 328 86.48 1o9yA 84 87.24 b.139.1.1 92692 1zccA 248 87.49 c.1.18.3 124903 2qptA 550 87.49 1kmqA 184 88.26 c.37.1.8 84412 1wf3A 301 88.78 c.37.1.8,d.52.3.1 114574,114575 2q3hA 201 89.74