# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.15e-12 2gcxA 75 7.13e-12 2dtrA 226 4.02e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 4.67e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 8.71e-05 2qq9A 226 0.000531 2aotA 292 3.066 c.66.1.19 127098 1ni3A 392 4.214 c.37.1.8,d.15.10.2 80531,80532 1rhsA 296 4.797 c.46.1.2,c.46.1.2 32703,32704 2e87A 357 4.826 2dbyA 368 5.077 1rhs 296 5.423 2gkgA 127 5.713 1ri5A 298 7.723 c.66.1.34 97502 2aouA 292 8.839 c.66.1.19 127100 2jbaA 127 8.921 1j48A 110 9.371 b.1.7.1 84112 1fqtA 112 9.849 b.33.1.1 24441 2ogeA 399 10.47 2dejA 350 10.48 1b00A 127 10.55 c.23.1.1 31122 1nf2A 268 13.18 c.108.1.10 91849 1pujA 282 15.63 c.37.1.8 88294 2egxA 269 15.64 1o69A 394 15.96 c.67.1.4 92560 1udxA 416 16.69 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2cxxA 190 17.13 c.37.1.8 131013 2hjgA 436 19.16 2fa1A 160 19.94 d.190.1.2 133182 1vekA 84 21.07 a.5.2.1 113636 1nrwA 288 21.60 c.108.1.10 86128 1k47A 337 21.79 d.14.1.5,d.58.26.4 72040,72041 2a5jA 191 22.06 c.37.1.8 126175 2c81A 418 23.54 1q0uA 219 23.78 c.37.1.19 95512 1z02A 446 24.53 1nrjB 218 25.51 c.37.1.8 86125 2v3mA 131 26.33 2ff7A 247 28.78 c.37.1.12 133377 1y8xB 98 30.83 2fjtA 182 32.81 1z3eB 73 33.83 a.60.3.1 124401 1g8kB 133 34.66 b.33.1.1 24435 2fh5B 214 34.94 c.37.1.8 133478 2bl9A 238 35.17 2gxqA 207 35.74 1x3sA 195 36.04 c.37.1.8 121670 2p19A 149 36.98 1uarA 285 37.20 c.46.1.2,c.46.1.2 107762,107763 2bcgY 206 37.38 c.37.1.8 128285 1h75A 81 37.55 c.47.1.1 60716 2ixeA 271 38.56 2ev1A 222 39.59 2f9lA 199 40.28 c.37.1.8 133166 2cz9A 350 40.54 2qm8A 337 41.40 1wmsA 177 42.22 c.37.1.8 109414 3bn1A 373 42.90 1l2tA 235 44.28 c.37.1.12 73514 1h65A 270 45.17 c.37.1.8 65640 1f5nA 592 45.63 a.114.1.1,c.37.1.8 19077,32152 2oggA 152 45.75 2bmjA 178 49.98 c.37.1.8 128797 2qptA 550 51.40 1yzqA 170 51.90 c.37.1.8 124286 2g6bA 180 52.05 c.37.1.8 134701 2bb3A 221 52.74 c.90.1.1 128257 2gf9A 189 52.83 2de0X 526 53.56 2cbzA 237 54.29 2ew1A 201 56.17 c.37.1.8 132446 2bbsA 290 57.17 2iwrA 178 57.35 1g6hA 257 57.62 c.37.1.12 60318 2g29A 417 58.32 2pcjA 224 58.81 2d2eA 250 58.83 1kvkA 395 58.91 d.14.1.5,d.58.26.3 73060,73061 1b0uA 262 59.17 c.37.1.12 32370 2j6iA 364 59.32 2fziA 206 59.44 c.71.1.1 134448 2pi1A 334 59.57 1tt8A 164 60.01 d.190.1.1 112635 1mb3A 124 60.60 c.23.1.1 78907 2bmeA 186 60.64 c.37.1.8 128790 1t9hA 307 61.02 b.40.4.5,c.37.1.8 112358,112359 2ffqA 171 61.09 1z0jA 170 61.17 c.37.1.8 124319 1z47A 355 61.24 1jalA 363 61.33 c.37.1.8,d.15.10.2 84138,84139 2d1hA 109 62.51 a.4.5.50 131125 2gj8A 172 62.77 c.37.1.8 135270 2yv5A 302 63.32 1ji0A 240 63.40 c.37.1.12 71665 1e0cA 271 63.82 c.46.1.2,c.46.1.2 32717,32718 1wa3A 205 63.93 c.1.10.1 120802 2imqX 282 65.46 1wg8A 285 65.80 a.60.13.1,c.66.1.23 114605,114606 1ufwA 95 65.83 d.58.7.1 99358 1gutA 68 65.90 b.40.6.1 65576 1ek0A 170 65.94 c.37.1.8 32076 1ee4A 423 66.52 a.118.1.1 19128 2uxwA 607 66.62 2pmkA 243 69.10 2h57A 190 69.16 2ccqA 99 69.25 d.314.1.1 130252 1rwzA 245 69.73 d.131.1.2,d.131.1.2 98005,98006 2qwvA 208 70.46 1xdwA 331 72.02 3ch0A 272 72.28 2oap1 511 73.18 1mkyA 439 74.34 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 2ob3A 330 75.39 1vplA 256 75.51 c.37.1.12 113966 1r2qA 170 75.74 c.37.1.8 96874 2ikkA 173 75.84 2okfA 140 76.03 2oogA 287 76.14 2gk6A 624 76.24 1wwkA 307 76.74 1wwpA 119 77.47 1z08A 170 78.13 c.37.1.8 124303 2ooiA 162 78.46 2zbvA 263 79.28 1qg4A 216 79.40 c.37.1.8 32035 1rfsA 139 79.46 b.33.1.1 24434 2ffjA 300 79.69 e.50.1.1 133387 1vd6A 224 80.99 c.1.18.3 119991 1dxy 333 81.23 2o55A 258 81.70 1kmvA 186 83.02 c.71.1.1 72757 3b5vA 248 83.15 2qu8A 228 84.07 1qp8A 303 84.69 c.2.1.4,c.23.12.1 30092,31352 1dxyA 333 84.73 c.2.1.4,c.23.12.1 30094,31354 2a5dA 175 85.85 c.37.1.8 126172 2j85A 122 86.00 d.321.1.1 138133 1z2aA 168 86.31 c.37.1.8 124374 1qdeA 224 86.74 c.37.1.19 32410 3cnvA 162 88.58 1gsjA 258 88.75 c.73.1.2 70397 1j4aA 333 89.13 c.2.1.4,c.23.12.1 71502,71503 1zccA 248 89.38 c.1.18.3 124903 1puiA 210 89.48 c.37.1.8 88292