# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 1.99e-12 2gcxA 75 1.09e-11 2dtrA 226 5.74e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 7.93e-05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.000117 2qq9A 226 0.000741 2aotA 292 3.236 c.66.1.19 127098 1ni3A 392 3.597 c.37.1.8,d.15.10.2 80531,80532 2e87A 357 4.043 2dbyA 368 4.458 1rhsA 296 5.049 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 5.446 1ri5A 298 6.279 c.66.1.34 97502 2gkgA 127 6.431 2ogeA 399 6.976 2dejA 350 7.988 2aouA 292 9.004 c.66.1.19 127100 2jbaA 127 9.644 1b00A 127 10.76 c.23.1.1 31122 1j48A 110 10.89 b.1.7.1 84112 2cxxA 190 11.92 c.37.1.8 131013 1nf2A 268 14.06 c.108.1.10 91849 2hjgA 436 14.28 1pujA 282 15.01 c.37.1.8 88294 1udxA 416 15.06 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1o69A 394 15.43 c.67.1.4 92560 1fqtA 112 17.52 b.33.1.1 24441 1nrwA 288 20.16 c.108.1.10 86128 2a5jA 191 20.56 c.37.1.8 126175 2c81A 418 21.59 1nrjB 218 22.16 c.37.1.8 86125 1k47A 337 23.06 d.14.1.5,d.58.26.4 72040,72041 2v3mA 131 26.13 2fa1A 160 27.28 d.190.1.2 133182 2ff7A 247 27.31 c.37.1.12 133377 2g29A 417 28.02 2j6iA 364 28.48 2bcgY 206 29.40 c.37.1.8 128285 1h75A 81 32.67 c.47.1.1 60716 1uarA 285 32.70 c.46.1.2,c.46.1.2 107762,107763 2fh5B 214 34.41 c.37.1.8 133478 1y8xB 98 35.87 2f9lA 199 36.42 c.37.1.8 133166 2qm8A 337 37.33 2cz9A 350 37.61 2egxA 269 37.88 1x3sA 195 38.32 c.37.1.8 121670 2bl9A 238 39.33 1l2tA 235 41.06 c.37.1.12 73514 1wmsA 177 41.52 c.37.1.8 109414 1z3eB 73 42.27 a.60.3.1 124401 2fjtA 182 42.39 2p19A 149 42.47 1q0uA 219 42.92 c.37.1.19 95512 1f5nA 592 43.04 a.114.1.1,c.37.1.8 19077,32152 1vekA 84 43.36 a.5.2.1 113636 2ixeA 271 43.82 1h65A 270 44.71 c.37.1.8 65640 1kvkA 395 44.73 d.14.1.5,d.58.26.3 73060,73061 1g8kB 133 45.54 b.33.1.1 24435 1mb3A 124 46.02 c.23.1.1 78907 3bn1A 373 46.16 1wwkA 307 47.99 1ufwA 95 48.86 d.58.7.1 99358 2bmjA 178 48.92 c.37.1.8 128797 2oggA 152 51.42 2fssA 365 51.42 1z02A 446 51.93 1e0cA 271 52.27 c.46.1.2,c.46.1.2 32717,32718 1g6hA 257 52.58 c.37.1.12 60318 2ew1A 201 52.62 c.37.1.8 132446 2cbzA 237 52.80 1wa3A 205 53.13 c.1.10.1 120802 2ffqA 171 53.65 2gj8A 172 53.67 c.37.1.8 135270 2de0X 526 53.82 1z47A 355 54.98 1yzqA 170 55.15 c.37.1.8 124286 2gf9A 189 56.25 2pcjA 224 57.16 2bbsA 290 57.26 2g6bA 180 57.64 c.37.1.8 134701 1t9hA 307 58.23 b.40.4.5,c.37.1.8 112358,112359 2iwrA 178 59.16 1jalA 363 59.27 c.37.1.8,d.15.10.2 84138,84139 1dxy 333 59.85 2d2eA 250 60.08 2imqX 282 60.08 2qptA 550 60.53 1ji0A 240 62.82 c.37.1.12 71665 1b0uA 262 63.62 c.37.1.12 32370 2fziA 206 63.94 c.71.1.1 134448 2bmeA 186 64.05 c.37.1.8 128790 2h57A 190 64.19 1tt8A 164 64.62 d.190.1.1 112635 1z0jA 170 65.70 c.37.1.8 124319 1wg8A 285 66.59 a.60.13.1,c.66.1.23 114605,114606 2ev1A 222 66.75 1mkyA 439 67.04 c.37.1.8,c.37.1.8,d.52.5.1 79250,79251,79252 1kpgA 287 67.71 c.66.1.18 68735 1z2aA 168 68.64 c.37.1.8 124374 2pmkA 243 71.97 2uxwA 607 72.01 2qu8A 228 72.37 2zbvA 263 72.86 1ek0A 170 74.17 c.37.1.8 32076 1dxyA 333 75.49 c.2.1.4,c.23.12.1 30094,31354 2bb3A 221 75.81 c.90.1.1 128257 2gxqA 207 76.01 1i3cA 149 76.20 c.23.1.1 71112 1rwzA 245 76.32 d.131.1.2,d.131.1.2 98005,98006 2ftxB 64 76.81 d.300.1.2 134086 1ee4A 423 77.01 a.118.1.1 19128 1eluA 390 77.25 c.67.1.3 34434 2pi1A 334 78.08 2a5dA 175 78.21 c.37.1.8 126172 1puiA 210 78.38 c.37.1.8 88292 1zccA 248 78.39 c.1.18.3 124903 2gk6A 624 79.51 2h17A 181 80.24 1qg4A 216 81.25 c.37.1.8 32035 1r2qA 170 81.70 c.37.1.8 96874 2qwvA 208 82.15 1z08A 170 82.43 c.37.1.8 124303 2yv5A 302 82.51 1xdwA 331 84.00 2d1hA 109 84.81 a.4.5.50 131125 1vplA 256 85.72 c.37.1.12 113966 1wf3A 301 87.16 c.37.1.8,d.52.3.1 114574,114575 2ooiA 162 87.22 2ccqA 99 87.99 d.314.1.1 130252 1kmvA 186 88.42 c.71.1.1 72757 1gutA 68 89.87 b.40.6.1 65576