# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2h3jA	75	5.67e-10		
2gcxA	75	5.70e-10		
1qw1A	121	0.000143		
2dtrA	226	0.000793	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1fx7A	230	0.003982	a.4.5.24,a.76.1.1,b.34.1.2	60088,60089,60090
2qq9A	226	0.03385		
1rhsA	296	4.018	c.46.1.2,c.46.1.2	32703,32704
1rhs	296	4.199		
1vekA	84	6.089	a.5.2.1	113636
2aotA	292	6.210	c.66.1.19	127098
1uarA	285	9.570	c.46.1.2,c.46.1.2	107762,107763
1j48A	110	12.36	b.1.7.1	84112
2dbyA	368	12.88		
2aouA	292	16.18	c.66.1.19	127100
1h75A	81	17.19	c.47.1.1	60716
1ri5A	298	17.41	c.66.1.34	97502
1ni3A	392	18.45	c.37.1.8,d.15.10.2	80531,80532
1e0cA	271	24.41	c.46.1.2,c.46.1.2	32717,32718
2oqoA	200	25.15		
1wwpA	119	28.31		
3cjpA	272	31.74		
1pujA	282	33.70	c.37.1.8	88294
2if1A	126	34.18	d.64.1.1	39547
2f7fA	494	36.23	c.1.17.1,d.41.2.1	133088,133089
2jbaA	127	36.60		
1y8xB	98	40.23		
1wmsA	177	42.11	c.37.1.8	109414
1dv0A	47	42.54	a.5.2.1	16289
2gkgA	127	44.17		
2qpqA	301	46.12		
1ee4A	423	47.37	a.118.1.1	19128
2egxA	269	52.57		
1z96A	40	56.13		
1qg4A	216	59.00	c.37.1.8	32035
2f5xA	312	61.47		
2o55A	258	65.15		
1ufwA	95	65.55	d.58.7.1	99358
1zccA	248	66.28	c.1.18.3	124903
2dvzA	314	67.33		
1x1rA	178	68.18	c.37.1.8	121595
2cxxA	190	69.21	c.37.1.8	131013
2ev1A	222	72.45		
1b00A	127	73.17	c.23.1.1	31122
1pht	85	74.35		
2gokA	429	75.21		
1kmqA	184	76.05	c.37.1.8	84412
2h57A	190	77.91		
2g3fA	421	78.44		
2e87A	357	86.85		
1v4vA	376	88.23	c.87.1.3	100313
1phtA	85	89.05	b.34.2.1	24483