# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h3jA 75 3.36e-12 2gcxA 75 1.54e-11 2dtrA 226 8.82e-06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fx7A 230 0.000128 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1qw1A 121 0.000172 2qq9A 226 0.000764 2e87A 357 2.380 2aotA 292 2.491 c.66.1.19 127098 1rhsA 296 2.857 c.46.1.2,c.46.1.2 32703,32704 1rhs 296 3.304 2dbyA 368 3.396 1ni3A 392 4.415 c.37.1.8,d.15.10.2 80531,80532 2ogeA 399 7.511 1pujA 282 7.863 c.37.1.8 88294 1ri5A 298 8.436 c.66.1.34 97502 2egxA 269 9.712 2dejA 350 11.98 1h65A 270 15.21 c.37.1.8 65640 1o69A 394 15.26 c.67.1.4 92560 2aouA 292 15.48 c.66.1.19 127100 2bcgY 206 16.30 c.37.1.8 128285 1vekA 84 16.72 a.5.2.1 113636 1nf2A 268 16.87 c.108.1.10 91849 2fjtA 182 16.88 1nrjB 218 17.04 c.37.1.8 86125 2a5jA 191 17.35 c.37.1.8 126175 1udxA 416 17.97 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 2ew1A 201 18.88 c.37.1.8 132446 1j48A 110 18.94 b.1.7.1 84112 1wmsA 177 19.17 c.37.1.8 109414 1fqtA 112 19.90 b.33.1.1 24441 2hjgA 436 20.71 1yzqA 170 20.78 c.37.1.8 124286 2gkgA 127 21.58 1nrwA 288 22.58 c.108.1.10 86128 2ixeA 271 22.93 1uarA 285 22.94 c.46.1.2,c.46.1.2 107762,107763 2ff7A 247 23.71 c.37.1.12 133377 1x3sA 195 24.56 c.37.1.8 121670 2yv5A 302 24.64 1k47A 337 24.66 d.14.1.5,d.58.26.4 72040,72041 2c81A 418 24.68 2gf9A 189 25.98 2okfA 140 26.45 1l2tA 235 27.28 c.37.1.12 73514 1gsjA 258 28.36 c.73.1.2 70397 2ffqA 171 28.82 1z2aA 168 28.83 c.37.1.8 124374 1z08A 170 29.10 c.37.1.8 124303 1wf3A 301 29.20 c.37.1.8,d.52.3.1 114574,114575 1kmqA 184 29.26 c.37.1.8 84412 1z0jA 170 29.41 c.37.1.8 124319 2g6bA 180 29.69 c.37.1.8 134701 1x1rA 178 30.59 c.37.1.8 121595 2gj8A 172 31.25 c.37.1.8 135270 2cbzA 237 31.57 2f9lA 199 31.81 c.37.1.8 133166 2fa1A 160 32.30 d.190.1.2 133182 1f5nA 592 32.78 a.114.1.1,c.37.1.8 19077,32152 2v3mA 131 33.68 1o6aA 96 33.75 b.139.1.1 92562 1qg4A 216 33.81 c.37.1.8 32035 1vg8A 207 34.39 c.37.1.8 108606 2bmeA 186 34.83 c.37.1.8 128790 1jalA 363 35.16 c.37.1.8,d.15.10.2 84138,84139 1e0cA 271 35.77 c.46.1.2,c.46.1.2 32717,32718 2acaA 189 36.83 d.63.1.2 126545 2p19A 149 37.20 2h57A 190 37.30 1ek0A 170 38.46 c.37.1.8 32076 2pcjA 224 41.02 1r2qA 170 41.34 c.37.1.8 96874 2fh5B 214 41.69 c.37.1.8 133478 1z02A 446 42.18 2qptA 550 42.58 2bmjA 178 42.77 c.37.1.8 128797 2j6iA 364 43.68 2j0vA 212 43.91 2a5dA 175 44.23 c.37.1.8 126172 2iwrA 178 45.36 2qm8A 337 45.37 1z47A 355 46.16 1mh1 186 46.82 1b0uA 262 46.86 c.37.1.12 32370 1h75A 81 46.91 c.47.1.1 60716 3bn1A 373 46.94 2g29A 417 47.17 1kvkA 395 47.42 d.14.1.5,d.58.26.3 73060,73061 2cz9A 350 47.66 2h17A 181 50.58 2bl9A 238 51.04 2yvqA 143 51.14 1f6bA 198 51.35 c.37.1.8 64986 1kpgA 287 51.54 c.66.1.18 68735 1ee4A 423 52.19 a.118.1.1 19128 1z06A 189 52.94 c.37.1.8 124301 2pmkA 243 53.97 2ob3A 330 54.35 1t9hA 307 54.85 b.40.4.5,c.37.1.8 112358,112359 2fn4A 181 55.04 c.37.1.8 133806 2bbsA 290 55.19 2ce2X 166 55.82 2d2eA 250 56.16 2ev1A 222 56.19 1nf3A 195 56.42 c.37.1.8 85594 2aalA 131 56.48 d.80.1.6 126483 2ikkA 173 56.67 2pi1A 334 56.92 2nq2C 253 57.02 1dxy 333 57.16 2inbA 140 57.49 1ctqA 166 57.72 c.37.1.8 31965 3cnvA 162 57.83 2q3hA 201 58.44 1g6hA 257 59.31 c.37.1.12 60318 2py6A 409 60.50 1z3eB 73 61.06 a.60.3.1 124401 2fssA 365 61.25 2d1hA 109 62.29 a.4.5.50 131125 1z96A 40 62.41 2zgwA 235 62.91 1rwzA 245 63.18 d.131.1.2,d.131.1.2 98005,98006 2qu8A 228 63.25 1s96A 219 63.60 c.37.1.1 98740 1oxxK 353 64.18 b.40.6.3,c.37.1.12 93715,93716 1zccA 248 64.21 c.1.18.3 124903 1wwkA 307 65.73 2it1A 362 66.84 1puiA 210 66.92 c.37.1.8 88292 3c0dA 119 67.65 1gdhA 320 68.61 c.2.1.4,c.23.12.1 30095,31355 1sgwA 214 69.09 c.37.1.12 105541 3ch0A 272 69.71 1im8A 244 70.71 c.66.1.14 66212 1eluA 390 71.70 c.67.1.3 34434 1g291 372 72.03 2oggA 152 72.42 1kaoA 167 72.91 c.37.1.8 32014 1aoeA 192 73.20 c.71.1.1 34923 1n0wA 243 73.55 c.37.1.11 79772 1vplA 256 73.64 c.37.1.12 113966 1mr3F 181 75.42 c.37.1.8 79422 1qp8A 303 76.06 c.2.1.4,c.23.12.1 30092,31352 1ji0A 240 76.90 c.37.1.12 71665 1dxyA 333 77.38 c.2.1.4,c.23.12.1 30094,31354 1vd6A 224 77.71 c.1.18.3 119991 1xtqA 177 77.87 c.37.1.8 122297 1xdwA 331 78.91 1b00A 127 79.72 c.23.1.1 31122 2jbaA 127 80.48 1o9yA 84 82.07 b.139.1.1 92692 2oap1 511 82.11 1zj6A 187 83.02 c.37.1.8 125145 2eryA 172 84.08 c.37.1.8 132306 2ooiA 162 84.61 1g8kB 133 85.18 b.33.1.1 24435 2e4qA 109 88.32